Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,542,170 – 5,542,289 |
Length | 119 |
Max. P | 0.954963 |
Location | 5,542,170 – 5,542,289 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.49 |
Mean single sequence MFE | -39.02 |
Consensus MFE | -31.48 |
Energy contribution | -31.92 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.05 |
Structure conservation index | 0.81 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5542170 119 + 22224390 UACAAAGGCACCCCUCUUU-UCGCCCAGUGUACAGCUGAAUGUUGCUGCCACGCUCCAGACGUGUCGCCGCAAUUUGCAGCCAAACGCCGGCGACAUCGGCUUGGCGCCUAAAAUCAAAC .....((((.((((.....-(((((..((((...((((...(((((.((.((((.......)))).)).)))))...))))...)))).)))))....))...)).)))).......... ( -40.20) >DroSec_CAF1 4097 119 + 1 UACAAAGGCACCCCUCUUU-UCGCCCAGUGUACAGCUGAAUGUUGCUGCCACGCUCCAGACGUGUCGCCGCAAUUUGCAGCCAAACGCCGGCGACAUCGGCUUGGCGCCUAAAAUCAAAC .....((((.((((.....-(((((..((((...((((...(((((.((.((((.......)))).)).)))))...))))...)))).)))))....))...)).)))).......... ( -40.20) >DroSim_CAF1 3806 119 + 1 UACAAAGGCACCCCUCUUU-UCGCCCAGUGUACUGCUGAAUGUUGCUGCCACGCUCCAGACGUGUCGCCGCAAUUUGCAGCCAAACGCCGGCGACAUCGGCUUGGCGCCUAAAAUCAAAC .....((((.((((.....-(((((..((((...((((...(((((.((.((((.......)))).)).)))))...))))...)))).)))))....))...)).)))).......... ( -40.20) >DroEre_CAF1 4294 113 + 1 ----A---AAGCACAUUUGUACGCCCAGUGUACUGCUGAAUGCUGCUGCCACGCUCCAGACGUGUCGCCGCAAUUUGCAGCCAAACGCCGGCGACAUCGGCUUGGCGCCUAAAAUCAAAC ----.---.(((((((((((((((...))))))....))))).))))((((.(((......(((((((((...((((....))))...))))))))).))).)))).............. ( -36.40) >DroYak_CAF1 3985 112 + 1 ----A---CAGCCCGCCUU-UUGCGCAGUGUACUGCUGAAUGUUGCUGCCACGCUCCAGACGUGUCGCCGCAAUUUGCAGCCAAACGCCGGCGACAUCGGCUUGGCGCCUAAAAUCAAAC ----.---..(((.(((..-.(((((.((((...((((...(((((.((.((((.......)))).)).)))))...))))...))))..))).))..)))..))).............. ( -38.10) >consensus UACAAAGGCACCCCUCUUU_UCGCCCAGUGUACUGCUGAAUGUUGCUGCCACGCUCCAGACGUGUCGCCGCAAUUUGCAGCCAAACGCCGGCGACAUCGGCUUGGCGCCUAAAAUCAAAC ....................(((((..((((...((((...(((((.((.((((.......)))).)).)))))...))))...)))).)))))....(((.....)))........... (-31.48 = -31.92 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:18 2006