Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,536,729 – 5,536,837 |
Length | 108 |
Max. P | 0.994160 |
Location | 5,536,729 – 5,536,837 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -27.91 |
Consensus MFE | -23.87 |
Energy contribution | -24.51 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.20 |
Structure conservation index | 0.86 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5536729 108 + 22224390 GUGGGCCAAAAAAAGUUUAUUGAUGCUGUAAAUAAGUAAAUAAAUAAUAGCCUGUAAUCAUUCCGAUGGGGUUUUCGGGAAAUGCAAUUUACGUUUGGCCCACAUGAU ((((((((((....((..((((..(((((.................))))).........((((((........))))))....))))..)).))))))))))..... ( -32.43) >DroSec_CAF1 26404 103 + 1 GUGGUCCAAGAAAAGUUUAUUGACGCUGUAAAUAAGUAAAUAAAUAAUAGCCUGUAAUCAUUCCGAUGGGGUUUUCGGGAA-----AUUUACGUUUGGCCCACAUGAU ((((.(((((....(((((((...(((.......))).)))))))........((((...((((((........)))))).-----..)))).))))).))))..... ( -25.60) >DroSim_CAF1 28942 108 + 1 GUGGUCCAAGAAAAGUUUAUUGACGCUGUAAAUAAGUAAAUAAAUAAUAGCCUGUAAUCAUUCCGAUGGGGUUUUCGGGAAAUGCAAUUUACGUUUGGCCCACAUGAU ((((.(((((....((..((((.((((((.................))))).........((((((........))))))...)))))..)).))))).))))..... ( -25.33) >DroEre_CAF1 26924 108 + 1 GUGGGCCAAGAAAAGUUUAUUGAUGGUGUAAAUAAGUAAAUAAAUAAUAGCCUGUAAUCAUUCCAAUGGGGAUUUCGGGAAAUGCAAUUUACGUUUGGCCCACAUGAU ((((((((((....((((((.......))))))..((((((.....((..((((.((((...((...)).)))).))))..))...)))))).))))))))))..... ( -31.30) >DroYak_CAF1 27029 108 + 1 GUGCGCCAAGAACAGUUUAUUGAUGGUGUAUAUAAGUAAAUAAAUAAUAGCCUGUAAUCAUUCCGAUGGGGAUUUCGGGAAAUGCAAUUUACGUUUGGCCCACAUGAU (((.((((((....((..((((..(((.(((.((......)).)))...)))........((((((........))))))....))))..)).)))))).)))..... ( -24.90) >consensus GUGGGCCAAGAAAAGUUUAUUGAUGCUGUAAAUAAGUAAAUAAAUAAUAGCCUGUAAUCAUUCCGAUGGGGUUUUCGGGAAAUGCAAUUUACGUUUGGCCCACAUGAU ((((((((((....((((((.......))))))..((((((.........((((.......(((....)))....)))).......)))))).))))))))))..... (-23.87 = -24.51 + 0.64)
Location | 5,536,729 – 5,536,837 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -19.79 |
Consensus MFE | -17.34 |
Energy contribution | -17.98 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.51 |
Structure conservation index | 0.88 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5536729 108 - 22224390 AUCAUGUGGGCCAAACGUAAAUUGCAUUUCCCGAAAACCCCAUCGGAAUGAUUACAGGCUAUUAUUUAUUUACUUAUUUACAGCAUCAAUAAACUUUUUUUGGCCCAC .....((((((((((.((((....((((..((((........)))))))).))))..(((..((..((......))..)).)))..............)))))))))) ( -25.40) >DroSec_CAF1 26404 103 - 1 AUCAUGUGGGCCAAACGUAAAU-----UUCCCGAAAACCCCAUCGGAAUGAUUACAGGCUAUUAUUUAUUUACUUAUUUACAGCGUCAAUAAACUUUUCUUGGACCAC .....((((.((((..((((((-----...((((........))))((((((........)))))).))))))(((((.((...)).))))).......)))).)))) ( -16.60) >DroSim_CAF1 28942 108 - 1 AUCAUGUGGGCCAAACGUAAAUUGCAUUUCCCGAAAACCCCAUCGGAAUGAUUACAGGCUAUUAUUUAUUUACUUAUUUACAGCGUCAAUAAACUUUUCUUGGACCAC .....((((.((((..((((....((((..((((........)))))))).))))..(((..((..((......))..)).)))...............)))).)))) ( -17.60) >DroEre_CAF1 26924 108 - 1 AUCAUGUGGGCCAAACGUAAAUUGCAUUUCCCGAAAUCCCCAUUGGAAUGAUUACAGGCUAUUAUUUAUUUACUUAUUUACACCAUCAAUAAACUUUUCUUGGCCCAC .....(((((((((..((((....((((..((((........)))))))).)))).((....((..((......))..))..))...............))))))))) ( -20.60) >DroYak_CAF1 27029 108 - 1 AUCAUGUGGGCCAAACGUAAAUUGCAUUUCCCGAAAUCCCCAUCGGAAUGAUUACAGGCUAUUAUUUAUUUACUUAUAUACACCAUCAAUAAACUGUUCUUGGCGCAC .....(((.(((((..........((((..((((........))))))))...((((..((((........................))))..))))..))))).))) ( -18.76) >consensus AUCAUGUGGGCCAAACGUAAAUUGCAUUUCCCGAAAACCCCAUCGGAAUGAUUACAGGCUAUUAUUUAUUUACUUAUUUACAGCAUCAAUAAACUUUUCUUGGCCCAC .....(((((((((..((((((........((((........))))((((((........)))))).))))))(((((.........))))).......))))))))) (-17.34 = -17.98 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:17 2006