Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 704,310 – 704,410 |
Length | 100 |
Max. P | 0.898611 |
Location | 704,310 – 704,410 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 89.10 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -18.63 |
Energy contribution | -18.71 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.23 |
Structure conservation index | 0.75 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 704310 100 - 22224390 UUAGUCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCGCGCGU ......(((((......))))).(((((....(((((.((((..(((((..........)).)))...)))).)))))..(((((....)))))))))). ( -25.80) >DroSec_CAF1 20506 100 - 1 UUAGCCCCAUUGAAUUUGAUGGCCGUGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCGCGCGU ......(((((......))))).(((((....(((((.((((..(((((..........)).)))...)))).)))))..(((((....)))))))))). ( -23.90) >DroEre_CAF1 23774 100 - 1 UUAGCCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACACCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCAUGUGU ......(((((......)))))..((((((..(((((.......((((((((.(((............)))))))))))..)))))..))))))...... ( -22.00) >DroYak_CAF1 20131 100 - 1 UUAGCCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCAUGUGUGU ...((.(((((......)))))..((((((.............))))))..........)).............(((((.(((((....))))).))))) ( -20.42) >DroAna_CAF1 26140 100 - 1 CUAGCCCCAUUGAAUUUGAUGGGCGCGCAUAAAUGUAAUUAUAAUGGGCAUUCCAUGCAGAUAUGUGCAUAACUGCAUAAGUACAUUAAUGCGUUUCCCG ...((((((((......)))))).))((((.((((((.((((.((((.....))))((((.(((....))).)))))))).)))))).))))........ ( -32.00) >consensus UUAGCCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCGUGCGU ......(((((......)))))..((((((..(((((.......((((((((...................))))))))..)))))..))))))...... (-18.63 = -18.71 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:53 2006