Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,530,009 – 5,530,104 |
Length | 95 |
Max. P | 0.848205 |
Location | 5,530,009 – 5,530,104 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -22.07 |
Consensus MFE | -13.56 |
Energy contribution | -15.56 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.61 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5530009 95 + 22224390 CCACUUUUUGCCGAUAUUAACA---------UAUGUACAUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGACCACUUUCGUCACAC ......((((((((((...((.---------...))....)).)))))))).(((((((((.........))))))))).......((((.......))))... ( -22.80) >DroSec_CAF1 19711 95 + 1 CCACUUUUUGCCGACAUUAACA---------UAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCACAC ......((((((((((...((.---------...))....)).))))))))..((((((((.........))))))))(((((...........)))))..... ( -24.60) >DroSim_CAF1 22284 95 + 1 CCACUUUUUGCCGACAUUAACA---------UAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCACAC ......((((((((((...((.---------...))....)).))))))))..((((((((.........))))))))(((((...........)))))..... ( -24.60) >DroEre_CAF1 20160 98 + 1 ---UAUUUUGCCGAUAUCAACAUUAUUAACAUAU-UAGCCCGCACGGCUAAAUGC-AUUUGGUUAUAUCACAAGUGGCACGAAUAUUGGCCACUUUCGUCACA- ---.........(((((.(((........(((.(-(((((.....))))))))).-.....))))))))..(((((((.(((...))))))))))........- ( -22.24) >DroYak_CAF1 20223 84 + 1 ACACUUUAUGCCGAUAUUAACA-------------UAGCUUGCCCGGCGAAAUGCCAUUUGGUUAUAUCAC-------ACGAAUAUUGGCCACUUUCGUCACAA .........(((((((((...(-------------(((((.....(((.....)))....)))))).....-------...))))))))).............. ( -16.10) >consensus CCACUUUUUGCCGAUAUUAACA_________UAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCACAC ......(((((((...............................)))))))..((((((((.........))))))))(((((...........)))))..... (-13.56 = -15.56 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:16 2006