Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,528,896 – 5,528,991 |
Length | 95 |
Max. P | 0.581674 |
Location | 5,528,896 – 5,528,991 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -42.38 |
Consensus MFE | -29.88 |
Energy contribution | -29.17 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.40 |
Mean z-score | -1.48 |
Structure conservation index | 0.71 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5528896 95 - 22224390 GCCGCCAAUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGACGGGAACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGUGCCGGUGC ..((((......((.((((((((((((..(..(....)(....)..)..)(((((.(((....))).)))))))).)))))))).))...)))). ( -48.10) >DroSim_CAF1 21229 89 - 1 GCCGCUAGCUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGACGGGAACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGUGC------ ((((....)......((((((((((((..(..(....)(....)..)..)(((((.(((....))).)))))))).)))))))))))..------ ( -44.70) >DroEre_CAF1 19037 89 - 1 GCCGCCAGUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGAUGGGCACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGCGC------ (((((((......)))((((((((((......(....).(((.....)))(((((.(((....))).)))))))).)))))))))))..------ ( -46.80) >DroWil_CAF1 19476 89 - 1 GCCGACAAUUGAAUGGGCACCAGAGCGGGCAGCGAGACGGUUACAGGCACACCAGGAGGCGGUACAGCUGGUGUGUCUGGGAUUGGUGC------ (((..((......)).((......)).))).(((...((((..((((((((((((..(......)..))))))))))))..)))).)))------ ( -33.80) >DroYak_CAF1 19133 85 - 1 GCCGCCAGUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUAAUGGGCACGCCCGGUGGUGGACCAGCUGGUGCCUCUGGUGCUG---------- ((.(((((......(((((((((..(((((..(....).((.....))..))))).(((....))).))))))))))))))))..---------- ( -39.00) >DroPer_CAF1 35974 89 - 1 GCGGCUAGCUGAAUGGGUACCAGGGCUGGCAGCGAGACGGUAACCGGCACACCGGGAGGAGGUCCGGCUGGUGCCUCUGGGGCUGGUGC------ (((.((((((..(.(((((((((.(((((..((......))..)))))...(((((......)))))))))))))).)..)))))))))------ ( -41.90) >consensus GCCGCCAGUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGACGGGCACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGUGC______ .(((((.......(((...))).))))).........((((..((((..((((((.(((....))).))))))..))))..)))).......... (-29.88 = -29.17 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:15 2006