Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,517,924 – 5,518,041 |
Length | 117 |
Max. P | 0.567824 |
Location | 5,517,924 – 5,518,041 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 95.19 |
Mean single sequence MFE | -26.53 |
Consensus MFE | -23.90 |
Energy contribution | -24.06 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.16 |
Structure conservation index | 0.90 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5517924 117 - 22224390 ACCAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGAAGAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU .(((((...................(((......))).(((((((((....)).)((........................))))))))))).))....((((((......)))))) ( -26.46) >DroSec_CAF1 8043 117 - 1 ACCAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGAGGAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU .((((((..((.........(((.....)))....((..((((((((....)).).(.....)...........)))))..)).))..)))).))....((((((......)))))) ( -26.90) >DroSim_CAF1 7935 117 - 1 ACUAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGAGGAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU .((((((..((.........(((.....)))....((..((((((((....)).).(.....)...........)))))..)).))..)))))).....((((((......)))))) ( -28.70) >DroEre_CAF1 8088 111 - 1 ACUAGCAAAUCAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGA------AGAGGUGCUAGGGGUGAGCAUAAAAUAGUGUGCU .((((((..((..(.....).((.((((((.....))..((.....))...))))))....................------.))..)))))).....((((((......)))))) ( -25.30) >DroYak_CAF1 7987 111 - 1 ACUAGCAAAUCAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGA------AGAGGUGCUAGGGGUGAGCAUAAAAUAGUGUGCU .((((((..((..(.....).((.((((((.....))..((.....))...))))))....................------.))..)))))).....((((((......)))))) ( -25.30) >consensus ACUAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGA_GAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU .(((((...................(((......))).(((((((((....)).).(.....)....................))))))))))).....((((((......)))))) (-23.90 = -24.06 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:05 2006