Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,515,376 – 5,515,467 |
Length | 91 |
Max. P | 0.726842 |
Location | 5,515,376 – 5,515,467 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 71.32 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -9.04 |
Energy contribution | -9.84 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.17 |
Mean z-score | -1.81 |
Structure conservation index | 0.31 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5515376 91 + 22224390 GAAGUAGUAAGGAGAUGGGAGAGAUGCCCGUCGUGCGCAUCACUGGGGAACUGGGCGGGAGCAGG--UGCGGA-------UCCGAGGUAUC---------GAUGGAGGA ...(((.(..(((((((((.......))))))...((((((.(..(....)..)((....)).))--))))..-------)))..).))).---------......... ( -29.90) >DroSec_CAF1 5419 86 + 1 GAAGUAGUAAGGACAUGGG----AUGCCCGUCGUGCGCAUCGCUGGGGAACUGGGCGGGAGCAGG--UGCGGA-------U-CGAGGGAUC---------GAUGGAGGA .............(((.((----...(((.((((.((((((.(..(....)..)((....)).))--)))).)-------.-)))))).))---------.)))..... ( -29.60) >DroSim_CAF1 5311 86 + 1 GAAGUAGUAAGGACAUGGG----AUGCCCGUCGUGCGCAUCGCUGGGGAACUGGGCGGGAGCAGG--UGCGGA-------U-CGAGGGAUC---------GAUGGAGGA .............(((.((----...(((.((((.((((((.(..(....)..)((....)).))--)))).)-------.-)))))).))---------.)))..... ( -29.60) >DroYak_CAF1 5400 85 + 1 GAAAUAGUA--------GG----AUGCCCGCCGUGCGCAUCCCUGGGGAACUGGGCGGGAGCAGG--UGCGGAGGUGCGAU-CAUGGGAUC---------GAUGGAGGA .........--------..----....((.((((.((((((.(..(....)..)((....)).))--))))......((((-(....))))---------))))).)). ( -28.30) >DroAna_CAF1 5162 89 + 1 GAAAUAGAGCGCGGAUGCA----AUACCAGC-------AAUUCC-GGGGUCAGGGCGGGAAAAAGGCUGCGGA-------U-CCAGGGAUCAUCGUGCGAGAAGAAGGA ........((((((.(((.----......))-------)(((((-.(((((...((((........)))).))-------)-)).)))))..))))))........... ( -27.20) >consensus GAAGUAGUAAGGACAUGGG____AUGCCCGUCGUGCGCAUCGCUGGGGAACUGGGCGGGAGCAGG__UGCGGA_______U_CGAGGGAUC_________GAUGGAGGA ...........................(((((.(((......((((....))))......))).)...))))..................................... ( -9.04 = -9.84 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:04 2006