Locus 201

Sequence ID X_DroMel_CAF1
Location 699,910 – 700,011
Length 101
Max. P 0.506188
window309

overview

Window 9

Location 699,910 – 700,011
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -26.55
Consensus MFE -18.52
Energy contribution -18.42
Covariance contribution -0.11
Combinations/Pair 1.27
Mean z-score -1.22
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.506188
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 699910 101 + 22224390
----------UGGG---AGUCAUUUAAUGGCUUACCUUAUCUUCGGCUUCCUCGGCGCGUUCUUCCGCUUCAAUGACUCGCUGUUCGAGCUCCGUUAGCUGCAA---GUAGAAAGAA---
----------.(((---((((((...))))))).))....((((((((....(((.(((......)))........((((.....))))..)))..))))).))---).........--- ( -22.80)
>DroVir_CAF1 23740 108 + 1
CC-AGCUAACUGUC---AGUCAUUUAAUGGCUUACCUUAUCUUCAGCUUCCUCGGCGCGUUCUUCCGCUUCGAUGACGCGUUGUUCGAGCUCCGUUAACUGCAA---A-AUA-AGAA---
.(-((.((((.((.---((((((...)))))).)).........(((((...(((((((((..((......)).)))))))))...)))))..)))).)))...---.-...-....--- ( -27.50)
>DroGri_CAF1 28162 107 + 1
CU-------CUGUCAGAAGUCAUUUAAUGACUUACCUUAUCUUCAGCUUCCUCAGCGCGUUCUUCCGCUUCGAUGACGCGUUGUUCGAGCUCCGUUAGCUGCAA---GUACAACAAA---
..-------.((.((((((((((...)))))))...........(((((...(((((((((..((......)).)))))))))...))))).......))))).---..........--- ( -27.00)
>DroWil_CAF1 19691 109 + 1
CUA-----UGAGUC---AGUUAUUUAAUGACUUACCUUAUCCUCAGCAUCCUCGGCGCGUUCUUCCGCUUCGAUAACGCGUUGUUCGAGCUCCGUUAACUGAAAUGGAUGGAAAGAA---
...-----((((((---(.........))))))).(((.(((...((.((..(((((((((..((......)).)))))))))...))))((((((......)))))).))))))..--- ( -29.30)
>DroMoj_CAF1 25396 106 + 1
CUUUGCCCACAGUC---AGUCAUUUAAUGACUUACCUUAUCUUCAGCUUCCUCGGCGCGCUCUUCCGCUUCGAUGACGCGUUGUUCCAGCUCCGUUAACUGCAA---A-----AGAA---
.(((((.....((.---((((((...)))))).)).........((((....(((((((.((.((......)).)))))))))....)))).........))))---)-----....--- ( -24.50)
>DroAna_CAF1 21062 109 + 1
CUA-----AAUGCC---AGUCAUUUAAUGGCUUACCUUAUCUUCGGCUUCCUCGGCGCGUUCUUCCGCUUCGAUGACGCGCUGUUCCAGCUCCGUUAGCUGAAA---AUGAAAAAAAAAA
...-----...(((---(.........)))).....((((.(((((((....(((.(((((..((......)).)))))((((...)))).)))..))))))).---))))......... ( -28.20)
>consensus
CU______ACUGUC___AGUCAUUUAAUGACUUACCUUAUCUUCAGCUUCCUCGGCGCGUUCUUCCGCUUCGAUGACGCGUUGUUCGAGCUCCGUUAACUGCAA___AUAGAAAGAA___
.................((((((...))))))............(((((...(((((((((..((......)).)))))))))...)))))............................. (-18.52 = -18.42 +  -0.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:52 2006