Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 699,910 – 700,011 |
Length | 101 |
Max. P | 0.506188 |
Location | 699,910 – 700,011 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -18.52 |
Energy contribution | -18.42 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.27 |
Mean z-score | -1.22 |
Structure conservation index | 0.70 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 699910 101 + 22224390 ----------UGGG---AGUCAUUUAAUGGCUUACCUUAUCUUCGGCUUCCUCGGCGCGUUCUUCCGCUUCAAUGACUCGCUGUUCGAGCUCCGUUAGCUGCAA---GUAGAAAGAA--- ----------.(((---((((((...))))))).))....((((((((....(((.(((......)))........((((.....))))..)))..))))).))---).........--- ( -22.80) >DroVir_CAF1 23740 108 + 1 CC-AGCUAACUGUC---AGUCAUUUAAUGGCUUACCUUAUCUUCAGCUUCCUCGGCGCGUUCUUCCGCUUCGAUGACGCGUUGUUCGAGCUCCGUUAACUGCAA---A-AUA-AGAA--- .(-((.((((.((.---((((((...)))))).)).........(((((...(((((((((..((......)).)))))))))...)))))..)))).)))...---.-...-....--- ( -27.50) >DroGri_CAF1 28162 107 + 1 CU-------CUGUCAGAAGUCAUUUAAUGACUUACCUUAUCUUCAGCUUCCUCAGCGCGUUCUUCCGCUUCGAUGACGCGUUGUUCGAGCUCCGUUAGCUGCAA---GUACAACAAA--- ..-------.((.((((((((((...)))))))...........(((((...(((((((((..((......)).)))))))))...))))).......))))).---..........--- ( -27.00) >DroWil_CAF1 19691 109 + 1 CUA-----UGAGUC---AGUUAUUUAAUGACUUACCUUAUCCUCAGCAUCCUCGGCGCGUUCUUCCGCUUCGAUAACGCGUUGUUCGAGCUCCGUUAACUGAAAUGGAUGGAAAGAA--- ...-----((((((---(.........))))))).(((.(((...((.((..(((((((((..((......)).)))))))))...))))((((((......)))))).))))))..--- ( -29.30) >DroMoj_CAF1 25396 106 + 1 CUUUGCCCACAGUC---AGUCAUUUAAUGACUUACCUUAUCUUCAGCUUCCUCGGCGCGCUCUUCCGCUUCGAUGACGCGUUGUUCCAGCUCCGUUAACUGCAA---A-----AGAA--- .(((((.....((.---((((((...)))))).)).........((((....(((((((.((.((......)).)))))))))....)))).........))))---)-----....--- ( -24.50) >DroAna_CAF1 21062 109 + 1 CUA-----AAUGCC---AGUCAUUUAAUGGCUUACCUUAUCUUCGGCUUCCUCGGCGCGUUCUUCCGCUUCGAUGACGCGCUGUUCCAGCUCCGUUAGCUGAAA---AUGAAAAAAAAAA ...-----...(((---(.........)))).....((((.(((((((....(((.(((((..((......)).)))))((((...)))).)))..))))))).---))))......... ( -28.20) >consensus CU______ACUGUC___AGUCAUUUAAUGACUUACCUUAUCUUCAGCUUCCUCGGCGCGUUCUUCCGCUUCGAUGACGCGUUGUUCGAGCUCCGUUAACUGCAA___AUAGAAAGAA___ .................((((((...))))))............(((((...(((((((((..((......)).)))))))))...)))))............................. (-18.52 = -18.42 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:52 2006