Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,511,013 – 5,511,120 |
Length | 107 |
Max. P | 0.761255 |
Location | 5,511,013 – 5,511,120 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 77.03 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -19.05 |
Energy contribution | -20.30 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.30 |
Mean z-score | -1.80 |
Structure conservation index | 0.56 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5511013 107 - 22224390 AUAC------AUAACAAAACAAUGCGUGUGGGCCAGCUGCUCCGCUUCCGGAGCACCAGCUUGCGCAGCUCCACCGCCAGGCAGGAGUACGUGCCGCAUCACAAGCCCGUCGU ....------.............(((...((((..(.(((((((....))))))).).((..((((.(((((.((....))..)))))..)))).)).......))))..))) ( -36.50) >DroPse_CAF1 15398 113 - 1 AUAUAUAAACAAAACAAAACAAUGCGAGUAAGUAACUUACUUAGAUUUCGCAGCACUUCUCUGCAGAGGUGCAGCAUCAAGCAGCAAUAUGUGCCACAGCACAAGCCGGCGCU ......................((((((((((...))))))).......((.((((((((....)))))))).)).....))).......(((((...((....)).))))). ( -30.20) >DroSim_CAF1 1049 107 - 1 AUAC------AUAACAAAACAAUGCGUGUGGGCCAGCUGCUUCGCUUCCGGAGCACCAGCCUGUGCAGCUCCACCGCCAGGCAGGAGUAUGUGCCGCUUCACAAGCCCGUCGU ....------.............(((...((((..(.(((((((....))))))).)(((..(..(((((((.((....))..))))).))..).)))......))))..))) ( -33.20) >DroEre_CAF1 1080 107 - 1 AUAC------AUAACAAAACAAUGCGUGUGGGCCAGUUGCUCCGCUUCCGGAGCACCACCUUGCGUAGCUCCACCGCCAGGCAGGAGUAUGUGCCGCAUCACAAGCCCGCCGU ....------.............(((.((((((..(.(((((((....))))))).)....(((((((((((.((....))..)))))...)).))))......))))))))) ( -37.80) >DroYak_CAF1 1047 107 - 1 AUAC------AUAACAAAACAAUGCGUGUGGGCCAGUUGCUCCGCUUCCGGAGCACCACCUUGCGCAGCUCCACCGCCAAGCAGGAGUACGUGCCGCAUCACAAGCCCGCCGU ....------.............(((.((((((..(.(((((((....))))))).)....(((((((((((...((...)).)))))...)).))))......))))))))) ( -37.00) >DroPer_CAF1 17916 108 - 1 AUAUAUAAACA-----AAACAAUGCGAGUAAGUAACUUACUUAGAUUUCGCAGCACUUCUCUGCAGAGGUGCAGCAUCAAGCAGCAAUAUGUGCCACAGCACAAGCCGGCGCU ...........-----......((((((((((...))))))).......((.((((((((....)))))))).)).....))).......(((((...((....)).))))). ( -30.20) >consensus AUAC______AUAACAAAACAAUGCGUGUGGGCCAGUUGCUCCGCUUCCGGAGCACCACCCUGCGCAGCUCCACCGCCAAGCAGGAGUAUGUGCCGCAUCACAAGCCCGCCGU ...........................((((((....(((((((....))))))).......((((((((((...........))))).)))))..........))))))... (-19.05 = -20.30 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:59 2006