Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,501,673 – 5,501,765 |
Length | 92 |
Max. P | 0.660232 |
Location | 5,501,673 – 5,501,765 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 75.16 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -10.99 |
Energy contribution | -12.33 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.39 |
Mean z-score | -2.05 |
Structure conservation index | 0.41 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5501673 92 - 22224390 GCUGCUCCAGCGGUAACAACAACGGCUGC---AACUACGGCGGUCACCAGCCAGCCGAGAUCGCACUUUACGAGCAGCCACCAUCACUACCACUU ((((...))))((((........((((((---..((.(((((((.....))).)))))).(((.......)))))))))........)))).... ( -31.29) >DroGri_CAF1 30685 89 - 1 GUUGCCGUUGCCGUUACC---ACAGCACCACCCAGU---GUGGUGACCACUCAGCCGCGUACCCACUUCACGACCAGUCACCAUCACUACCACUU (((((.((((..((((((---(((.(........))---))))))))....)))).))).)).........((....))................ ( -18.10) >DroSec_CAF1 26219 89 - 1 GCUGCUCCAGCGGUAACA---ACGGCUGC---AACUACGGCGGUCAGCAGCCAGCCGAGGUCGCACUUCACAAGCAGCCACCAUCACUACCACUU (((((....)))))....---..((((((---......((((((.....))).)))((((.....))))....))))))................ ( -30.40) >DroSim_CAF1 19675 89 - 1 GCUGCCCCAGCGGUAACA---ACAGCUGC---AACUACGGCGGUCACCAGCCAGCCGAGGUCGCACUUCACGAGCAGCCACCAUCACUACCACUU ((((...))))((((...---...(((((---......((((((.....))).)))((((.....))))....))))).........)))).... ( -26.66) >DroEre_CAF1 37036 81 - 1 --------AGCUGCUGCC---CCAGCAGC---AACUACGGCGGUCACCAGCCAGCCGAGAUCGCACUUCACGAGCAGCCACCAUCACUACCACUU --------.(((((((..---.)))))))---......((((((.....))).((((.((.......)).)).)).)))................ ( -24.20) >DroWil_CAF1 59947 89 - 1 GCGGCCACCUCGGUGACU---ACGGUGGC---CUCUGCGGUGGUCACCAAUCAGCCGCGUCCACAUUUCACCAGCAGCCAUCAUCAUUACCAUUU (((((......(((((((---((.(..(.---..)..).))))))))).....)))))..................................... ( -28.70) >consensus GCUGCCCCAGCGGUAACA___ACAGCUGC___AACUACGGCGGUCACCAGCCAGCCGAGAUCGCACUUCACGAGCAGCCACCAUCACUACCACUU (((((..((((.((.......)).)))).........(((((((.....))).))))................)))))................. (-10.99 = -12.33 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:55 2006