Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,499,017 – 5,499,137 |
Length | 120 |
Max. P | 0.721517 |
Location | 5,499,017 – 5,499,137 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -42.42 |
Consensus MFE | -37.11 |
Energy contribution | -36.73 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.38 |
Mean z-score | -1.58 |
Structure conservation index | 0.87 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5499017 120 + 22224390 CCAGCGUAGUGGAGCAGUAGCAGUAGGACAGGUUCGUCUUGAGAUCCUCGCAGAAUUGCUGCUGCUGCGCAAUGCUCUGGAUGCGCGAGCGGGCGAAUUCUCACAUAUACGUGGGCUUCA ((((.((((((.(((((((((((((((((......)))))(((...))).....)))))))))))).)))..))).)))).(((....)))...(((..(((((......))))).))). ( -47.50) >DroVir_CAF1 38325 120 + 1 CCAGAGUUGUGGAGCAGUAGCAGUAGGAUAGAUUGGUCUUGAGAUCCUCGCAGAAUUGUUGCUGCUGCGCAAUACUUUGAAUGCGCGAGCGGGCGAAUUCUCACAUAUAUGCCGGCUUUA .((((((((((.(((((((((((((((((......)))))(((...))).....)))))))))))).))))..)))))).......((((.((((.((........)).)))).)))).. ( -42.60) >DroGri_CAF1 27312 120 + 1 CCAGAGUUGUGGAACAGUAGCAGUAGGAUAGAUUUGUCUUGAGAUCCUCACAGAAUUGUUGCUGCUGCGCAAUGCUCUGAAUGCGCGAGCGGGCGAAUUCUCACAUAUACGUCGGCUUGA .((((((((((.(.((((((((((((((((....))))))(((...))).....)))))))))).).))))..))))))......(((((.((((.((........)).)))).))))). ( -40.60) >DroWil_CAF1 57025 120 + 1 CUAAAGUUGUCGAGCAAUAGCAAUAGGAUAGAUUCGUUUUGAGAUCCUCACAGAAUUGUUGCUGCUGCGCAAUACUCUGAAUGCGCGAGCGGGCGAAUUCUCACAUAUAUGUGGGCUUCA .....((((.((((((.((((((((((((.((......))...)))))......))))))).)))).)))))).....(..(((....)))..)(((..((((((....)))))).))). ( -31.30) >DroMoj_CAF1 31995 120 + 1 CCAGAGUUGUGGAACAGUAGCAGUGGGAUAGAUUGGUCUUGAGAUCCUCGCAGAAUUGUUGCUGCUGCGCAAUGCUUUGAAUGCGCAUGCGGGCGAAUUCUCACAUGUACGUCGGCUUUA .((((((((((.(.((((((((((..(...((..((((....)))).)).)...)))))))))).).))))..)))))).(((..((((.(((......))).))))..)))........ ( -35.50) >DroAna_CAF1 25234 120 + 1 CCAGGGUGGUGGAGCAGUAGCAGUAGGAGAGGUUCGUCUUGAGGUCCUCGCAGAACUGCUGCUGCUGCGCAAUGCUCUGAAUGCGCGAGCGGGCGAACUCUCACAUGUACGUCGGCUUGA .((((((.(((.((((((((((((..(.((((..(.......)..)))).)...)))))))))))).)))...))))))......(((((.((((.((........)).)))).))))). ( -57.00) >consensus CCAGAGUUGUGGAGCAGUAGCAGUAGGAUAGAUUCGUCUUGAGAUCCUCGCAGAAUUGUUGCUGCUGCGCAAUGCUCUGAAUGCGCGAGCGGGCGAAUUCUCACAUAUACGUCGGCUUCA .((((((((((.(((((((((((((((((......)))))(((...))).....)))))))))))).))))..)))))).......((((.((((.((........)).)))).)))).. (-37.11 = -36.73 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:52 2006