Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,484,676 – 5,484,768 |
Length | 92 |
Max. P | 0.569634 |
Location | 5,484,676 – 5,484,768 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 85.87 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -17.72 |
Energy contribution | -18.17 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -1.77 |
Structure conservation index | 0.79 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5484676 92 - 22224390 GUUCUGGGUUCUGGGUUCUGGGUUCAGGGUGCGGCUUCUAUAGAUUCCCCGCAUACUUUUUGCGCCCGCUCACCACUCACCUU-UUACCUAUC ....(((((...((((....(((...(((((.(((.((....))......(((.......))))))))))))))....)))).-..))))).. ( -26.40) >DroSec_CAF1 9749 83 - 1 ----------CCGGGUUCUGGGCUCAGGGUGCGACUUCGAUAGAUUCCCCGCAUUCUUUUUCCGCCCUCUCACCACUCACCUCCUUACCUAUC ----------..((.....((((..((((((((...((....)).....))))))))......)))).....))................... ( -18.70) >DroSim_CAF1 3139 83 - 1 ----------CCGGGUUCUGGGCUCAGGGUGCGGCUUCGAUAGAUUCCCCGCAUACUUUUUGCGCCCUCUCACCACUCACCUCCUUACCUAUC ----------..((.....((((.((((((((((..((....))....))))))....)))).)))).....))................... ( -21.80) >consensus __________CCGGGUUCUGGGCUCAGGGUGCGGCUUCGAUAGAUUCCCCGCAUACUUUUUGCGCCCUCUCACCACUCACCUCCUUACCUAUC .............(((...((((.((((((((((..((....))....))))))....)))).))))....)))................... (-17.72 = -18.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:47 2006