Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,470,532 – 5,470,635 |
Length | 103 |
Max. P | 0.879562 |
Location | 5,470,532 – 5,470,635 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.58 |
Mean single sequence MFE | -32.52 |
Consensus MFE | -21.38 |
Energy contribution | -19.30 |
Covariance contribution | -2.08 |
Combinations/Pair | 1.50 |
Mean z-score | -1.42 |
Structure conservation index | 0.66 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5470532 103 - 22224390 -------------AACUAAGUAACUACUGACUACU--AACUAAAG--UCGAUCAAAAGGUUGGACUAGCCACAUUCAGGUUGACCUGAAAGCUGGCCCAGCGAUAGUCGCGGCUAUCCGC -------------..............(((((...--......))--)))........(((((.(((((....((((((....)))))).))))).)))))((((((....))))))... ( -30.70) >DroPse_CAF1 8435 118 - 1 GAUAUAUAUUAGGCACUAUACAUACAUUGGCUAUC--AGCUAAUCCUCGGAUCAGAAGGUCUGGGCGGCCACAUUUAGAUUCACUUGGACGGUAGCCCAGCGAUAGUCGCGGCUGUCGGG ...........(((...........((((((....--.))))))(((((((((....)))))))).))))...................((..((((..(((.....)))))))..)).. ( -34.10) >DroSec_CAF1 10287 96 - 1 -------------AACUAAAUAACUACUGAC---------UAAAA--UCAAUCAAAAGGCUGGACUAGCCACAUUCAGGUUGACCUGGAAGCUGGCCCAGCGGUAGUCGCGGCUAUCCGC -------------.........((((((((.---------.....--)).........(((((.(((((....((((((....)))))).))))).))))))))))).((((....)))) ( -32.20) >DroYak_CAF1 9258 100 - 1 -------------AACUA-GUAACUAC-AAUUACUCGACCUACGG-----GCUAAAAGGCUGGACUGGCCACAUUCAGAUUGAUCUGGAAGCUGGCCCAGCGGUAGUCGCGGCUAUCCGG -------------.....-(..(((((-........(.((....)-----))......(((((.(..((....((((((....)))))).))..).))))).)))))..)((....)).. ( -31.50) >DroPer_CAF1 8497 118 - 1 GAUAUAUAUUAGGCACUAUACAUACAUUGGCUAUC--AGCUAAUCCUCGGAUCAAAAGGUCUGGGCGGCCACAUUUAGAUUCACUUGGACGGUAGCCCAGCGAUAGUCGCGGCUGUCGGG ...........(((...........((((((....--.))))))(((((((((....)))))))).))))...................((..((((..(((.....)))))))..)).. ( -34.10) >consensus _____________AACUAAAUAACUACUGACUACC__AGCUAAAC__CCGAUCAAAAGGUUGGACUGGCCACAUUCAGAUUGACCUGGAAGCUGGCCCAGCGAUAGUCGCGGCUAUCCGG ............................................................((((.(((((...((((((....))))))..........(((.....)))))))))))). (-21.38 = -19.30 + -2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:40 2006