Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 678,731 – 678,825 |
Length | 94 |
Max. P | 0.698953 |
Location | 678,731 – 678,825 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 74.98 |
Mean single sequence MFE | -30.82 |
Consensus MFE | -18.95 |
Energy contribution | -19.82 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.33 |
Mean z-score | -1.40 |
Structure conservation index | 0.62 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 678731 94 + 22224390 UGAGCUUGCUGAGGCGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUGAAAACAGGUAAG-GGAAAGAAAGC--AAAAGGUUA ...((((((((((..((((((....))))))..)))))).((((((....)))).))(((((....)))))...-.......))))--......... ( -36.30) >DroSec_CAF1 2707 94 + 1 UGAGCUUGCUGGGGCGGUGGCUUCGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUAUAAACAGGUAAG-GGAAAGAAAGC--AAAAGGUUA ...((((((((((..((((((....))))))..)))))).((((((....)))).))((((......))))...-.......))))--......... ( -35.70) >DroEre_CAF1 2798 92 + 1 GGAGCUUGUUGGGGUGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUAAAAACAGGCAAGGGGAAAGAAAG-----GAGGUUA ...(((((((((((..((((((.((........)).))))))..))))..((......))....)))))))..............-----....... ( -32.20) >DroWil_CAF1 2911 91 + 1 UGUG---ACUGUGCUUGGGGCUUGGGCCACUCACUCAGUCGCUGCUCCAUAGCUCGCACCUUAAAGCCAGAAAA-AUACGUAGAGG--AAACAGUUG ...(---((((((((((((((...(((.(((.....))).))))))))).))).....((((............-.......))))--..)))))). ( -23.51) >DroYak_CAF1 2174 82 + 1 UGAGCUUGUUGGGGCGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUGGAAA---------GGAAAGGAA------GCGGUUA ...(((...(((((((((((((.((........)).))))))))))))).))).(((.(((.....---------....)))..------))).... ( -36.20) >DroAna_CAF1 3922 90 + 1 UGAG------GUGGCGGUGGUUUGGGCCACUCACUCAGCCGCUGUUCCAUAGCACGCACCUAAGGACGAGCGAG-AAAAAAAAAGGAUAAAAGGAUA ((((------.((..((((((....))))))))))))..((((..(((.(((.......))).)))..))))..-...................... ( -21.00) >consensus UGAGCUUGCUGGGGCGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUAAAAACAGGCAAG_GGAAAGAAAG___AAAAGGUUA .......((((((..((((((....))))))..)))))).((((((....)))).))........................................ (-18.95 = -19.82 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:48 2006