Locus 1987

Sequence ID X_DroMel_CAF1
Location 5,457,164 – 5,457,256
Length 92
Max. P 0.697359
window3239

overview

Window 9

Location 5,457,164 – 5,457,256
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 79.70
Mean single sequence MFE -29.84
Consensus MFE -17.08
Energy contribution -17.28
Covariance contribution 0.20
Combinations/Pair 1.29
Mean z-score -1.92
Structure conservation index 0.57
SVM decision value 0.34
SVM RNA-class probability 0.697359
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5457164 92 - 22224390
GCCUGCUCCUGCUUCACUUUCAGCAGGAGCUGCUCCUGCAGACGCAUCUCCUCGUCGUGGUCGUCGCAGAUGUCUAUCUCGGGAUCGGCAUC----
(((.(((((((((........))))))))).(.(((((.(((.((((((...((.((....)).)).))))))...)))))))).))))...---- ( -38.90)
>DroSec_CAF1 63983 92 - 1
GCCUGCUCCUGCUUCACUUUCAGCAGGAGCUGUUCCUGCAGACGCAUCUCCUCGUCGUGGUCGUCGCAGAUGUCUUUCUCGGGAUCGACAUC----
....(((((((((........))))))))).....((((.((((.(((.(......).)))))))))))(((((..((....))..))))).---- ( -33.90)
>DroWil_CAF1 132711 89 - 1
GCCUGCUCCUGUUUGAUCUUGAGCAGCAACUGCUGAUGCGACUGAGUCU---CAUCAUGGUCAUCGCAAAUAUCAAUUUCUCCCUCACCAUC----
((((((((..(......)..))))))..((((.(((((.(((...))).---)))))))))....)).........................---- ( -18.10)
>DroYak_CAF1 65627 96 - 1
GCCUGCUCCUGCUUCACUUUCAGCAGCAGCUGCUCCUGCAGACGCAUCUCCUCGUCGUGGUCAUCGCAGAUGUCUAUCUCGGGAUCGGCGUCCCCA
....(((.(((((........))))).)))(((....)))(((((...(((.((..((((.((((...)))).))))..)))))...))))).... ( -33.50)
>DroAna_CAF1 81471 92 - 1
GCCUGCUCCUGCUUCACCUUGAGCAGCAGCUGCUCCUGCAGGCGCACCUCCUCGUCGUGGUCGUCGCAAAUGUCGAUCUCCCCCUCCCCGUC----
(((((((.((((((......)))))).))).((....)))))).............(.(((((.((....)).))))).)............---- ( -24.80)
>consensus
GCCUGCUCCUGCUUCACUUUCAGCAGCAGCUGCUCCUGCAGACGCAUCUCCUCGUCGUGGUCGUCGCAGAUGUCUAUCUCGGGAUCGCCAUC____
((..(((.(((((........))))).))).))..((((.((((.(((..........)))))))))))........................... (-17.08 = -17.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:37 2006