Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,453,087 – 5,453,214 |
Length | 127 |
Max. P | 0.973266 |
Location | 5,453,087 – 5,453,178 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -25.55 |
Consensus MFE | -11.99 |
Energy contribution | -15.02 |
Covariance contribution | 3.03 |
Combinations/Pair | 1.23 |
Mean z-score | -2.69 |
Structure conservation index | 0.47 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5453087 91 + 22224390 UGUGUGUGUGUGUGUGUGGGAGUGAGUGCAUUUCGCUUUUUGCAUUUGUGUGCAAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAA ..(((((.(((.....((((((((((.....)))))))(((((((....)))))))..))).....))).)))))....(((....))).. ( -26.60) >DroPse_CAF1 86096 71 + 1 CGUGUGU----GUGUGCGCGCGUG----------------UGUGUUAAUGUUCAGAAAUCAAAUUAACAAACACAAUUGGCUGAAAAGUGA .((((((----....))))))(((----------------(.(((((((.............))))))).)))).....(((....))).. ( -19.82) >DroSec_CAF1 59882 89 + 1 UGUGUGUG--UGUUUGUGGGUGUGAGUGCAUUUCCCUUUUUGCAUUUGUGUGCAAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAA ......((--((((((((((.(((....)))..)))(((((((((....)))))))))........)))))))))....(((....))).. ( -28.50) >DroSim_CAF1 58275 89 + 1 UGUGUGUG--UGUUUGUGGGUGUGAGUGCAUUUCGCUUUUUGCAUUUGUGUGCGAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAA ......((--(((((((..(((((((.....)))))(((((((((....)))))))))....))..)))))))))....(((....))).. ( -27.50) >DroEre_CAF1 71663 85 + 1 UCUGUGU------GUGCGGGUGUGAGUACAAUUCGCUUUUUGCAUUUGUGUGCGAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAA ......(------((((..((((((((...))))))(((((((((....)))))))))........))..)))))....(((....))).. ( -24.50) >DroYak_CAF1 61566 89 + 1 UGUAAGUG--CGAGCGUGGGUGUGAGUGCAUUUCGCUUUUUGCAUUUGUGUGCGAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAA .....(((--((((((.((((((....)))))))))))(((((((....)))))))..............)))).....(((....))).. ( -26.40) >consensus UGUGUGUG__UGUGUGUGGGUGUGAGUGCAUUUCGCUUUUUGCAUUUGUGUGCAAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAA ..(((((..............(((((.....)))))(((((((((....)))))))))............)))))....(((....))).. (-11.99 = -15.02 + 3.03)
Location | 5,453,110 – 5,453,214 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.51 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -14.62 |
Energy contribution | -18.60 |
Covariance contribution | 3.97 |
Combinations/Pair | 1.22 |
Mean z-score | -4.77 |
Structure conservation index | 0.59 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5453110 104 + 22224390 GAGUGCAUUUCGCUUUUUGCAUUUGUGUGCAAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAACA---AAAAAAAAACAAGCAAA-AAGCGAAACAACAACAA ..((...(((((((((((((.....(((((.................)))))....(((....)))....---............)))))-))))))))..))..... ( -29.13) >DroPse_CAF1 86115 89 + 1 G----------------UGUGUUAAUGUUCAGAAAUCAAAUUAACAAACACAAUUGGCUGAAAAGUGAAAAGUAAA--AGAAGAAGCAGA-AUCAGAAGCAAAAGCAA (----------------(((((((((.............))))))..))))..((.(((....))).)).......--............-.......((....)).. ( -10.92) >DroSec_CAF1 59903 102 + 1 GAGUGCAUUUCCCUUUUUGCAUUUGUGUGCAAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAACA---AAA--AAAACAAGCAAA-AAGCGAAACAACAACAA ..((...((((.((((((((.....(((((.................)))))....(((....)))....---...--.......)))))-))).))))..))..... ( -22.83) >DroSim_CAF1 58296 102 + 1 GAGUGCAUUUCGCUUUUUGCAUUUGUGUGCGAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAACA---AAA--AAAACAAGCAAA-AAGCGAAACAACAACAA ..((...(((((((((((((.....(((((.................)))))....(((....)))....---...--.......)))))-))))))))..))..... ( -29.83) >DroEre_CAF1 71680 105 + 1 GAGUACAAUUCGCUUUUUGCAUUUGUGUGCGAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAACAACAAAA--UAAAAAAGCAAAAAAGUGAAAAAGCGA-AA ........((((((((((.(((((...(((..............(((......)))(((....)))..........--.......)))...))))))))))))))-). ( -25.50) >DroYak_CAF1 61587 102 + 1 GAGUGCAUUUCGCUUUUUGCAUUUGUGUGCGAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAACA---AAA--AAAACAAGCAAA-AAGCGAAACAACAACAA ..((...(((((((((((((.....(((((.................)))))....(((....)))....---...--.......)))))-))))))))..))..... ( -29.83) >consensus GAGUGCAUUUCGCUUUUUGCAUUUGUGUGCAAAAAUCAAAUUAACAAGCACAAUUGGCUGAAAGGCAACA___AAA__AAAACAAGCAAA_AAGCGAAACAACAACAA ..((...(((((((((((((.....(((((.................)))))....(((....)))...................))))).))))))))..))..... (-14.62 = -18.60 + 3.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:36 2006