Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,447,775 – 5,447,878 |
Length | 103 |
Max. P | 0.980839 |
Location | 5,447,775 – 5,447,878 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.18 |
Mean single sequence MFE | -26.24 |
Consensus MFE | -21.17 |
Energy contribution | -21.77 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.35 |
Structure conservation index | 0.81 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5447775 103 + 22224390 UAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAAC-CCCCAGAAAAACGCCCGGAAAAACGGCCCACCCAC- .....(((..((...((((((..((((....)))).(((((((........)))))))...)))))).-.....))....)))(((......))).........- ( -25.10) >DroSec_CAF1 54441 98 + 1 UAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGA-----GCCAAC-CCCACGAAAAACGACCGGAAAAACCGCCCACCCAC- ....((.(((.....(((((((.((((....))))....((((........))))))-----)))))(-(...((.....))...))......))).)).....- ( -23.10) >DroSim_CAF1 53232 104 + 1 UAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAACCCCCACGAAAAACGCCCGGAAAAACGGCCCACCCAC- .....((((((....((((((..((((....)))).(((((((........)))))))...)))))).....))).....)))(((......))).........- ( -26.20) >DroEre_CAF1 65813 104 + 1 UAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAAC-CCCCGAGAAAACGCCCGGAAAAACGGACUACCCACC .........(((...((((((..((((....)))).(((((((........)))))))...)))))).-..(((.(......).))).......)))........ ( -26.10) >DroYak_CAF1 56289 104 + 1 UAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAAC-CCCCAGAAAAACGCCCGGAAAAACGGGCCACCCACC ...............((((((..((((....)))).(((((((........)))))))...)))))).-............(((((......)))))........ ( -30.70) >consensus UAAUUGCGCGUCAUAUUGGCUCAGCUAUACUUAGCCCUCGUCUUUCGCCCCAGACGAGAAAAGCCAAC_CCCCAGAAAAACGCCCGGAAAAACGGCCCACCCAC_ .......((((....(((((...((((....)))).(((((((........)))))))....)))))............))))(((......))).......... (-21.17 = -21.77 + 0.60)
Location | 5,447,775 – 5,447,878 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 93.18 |
Mean single sequence MFE | -37.18 |
Consensus MFE | -32.78 |
Energy contribution | -33.78 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.59 |
Structure conservation index | 0.88 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5447775 103 - 22224390 -GUGGGUGGGCCGUUUUUCCGGGCGUUUUUCUGGGG-GUUGGCUUUUCUCGUCUGGGGCGAAAGACGAGGGCUAAGUAUAGCUGAGCCAAUAUGACGCGCAAUUA -(((.((((((((..(..(((((......)))))..-).))))))..(((((((........)))))))((((.((.....)).))))......)).)))..... ( -37.80) >DroSec_CAF1 54441 98 - 1 -GUGGGUGGGCGGUUUUUCCGGUCGUUUUUCGUGGG-GUUGGC-----UCGUCUGGGGCGAAAGACGAGGGCUAAGUAUAGCUGAGCCAAUAUGACGCGCAAUUA -(((...((.(((.....))).))......(((.(.-((((((-----((((((........))))...(((((....))))))))))))).).))))))..... ( -33.50) >DroSim_CAF1 53232 104 - 1 -GUGGGUGGGCCGUUUUUCCGGGCGUUUUUCGUGGGGGUUGGCUUUUCUCGUCUGGGGCGAAAGACGAGGGCUAAGUAUAGCUGAGCCAAUAUGACGCGCAAUUA -.((.((((.(((......))).).....((((....((((((((..(((((((........)))))))(((((....)))))))))))))))))))).)).... ( -36.00) >DroEre_CAF1 65813 104 - 1 GGUGGGUAGUCCGUUUUUCCGGGCGUUUUCUCGGGG-GUUGGCUUUUCUCGUCUGGGGCGAAAGACGAGGGCUAAGUAUAGCUGAGCCAAUAUGACGCGCAAUUA .(((.((.(((((......))))).......((...-((((((((..(((((((........)))))))(((((....))))))))))))).)))).)))..... ( -38.10) >DroYak_CAF1 56289 104 - 1 GGUGGGUGGCCCGUUUUUCCGGGCGUUUUUCUGGGG-GUUGGCUUUUCUCGUCUGGGGCGAAAGACGAGGGCUAAGUAUAGCUGAGCCAAUAUGACGCGCAAUUA .(((.((.(((((......)))))............-((((((((..(((((((........)))))))(((((....)))))))))))))...)).)))..... ( -40.50) >consensus _GUGGGUGGGCCGUUUUUCCGGGCGUUUUUCGGGGG_GUUGGCUUUUCUCGUCUGGGGCGAAAGACGAGGGCUAAGUAUAGCUGAGCCAAUAUGACGCGCAAUUA .(((.((.(((((......))))).............((((((((..(((((((........)))))))(((((....)))))))))))))...)).)))..... (-32.78 = -33.78 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:31 2006