Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,424,989 – 5,425,081 |
Length | 92 |
Max. P | 0.921705 |
Location | 5,424,989 – 5,425,081 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 76.97 |
Mean single sequence MFE | -32.32 |
Consensus MFE | -17.22 |
Energy contribution | -17.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.29 |
Mean z-score | -2.20 |
Structure conservation index | 0.53 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5424989 92 + 22224390 CCUCUCUCGUUCCCACCCCAGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAAUUCCCUUCGCGCGAGGGGUUGGGAAUGAUGCAAA---GC ......(((((((((((((.((.....((....))((((.((((............))))))))..))..)))).)))))))))......---.. ( -31.50) >DroSec_CAF1 32727 91 + 1 CCUCUCUCGUUCCCACCCCUGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAUUUCCCUUCGU-CGAGGGGUUGGGAAUGAUGCGUG---GC ((.(.(((((((((((((((((.(((((((((((....)))...))))...........)))).))-..))))).))))))))).).).)---). ( -32.90) >DroSim_CAF1 31577 91 + 1 CCUCUCUCGUUCCCACCCCUGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAUUUCCCUUCGU-CGAGGGGUUGGGAAUGAUGCGAG---GC ((((.(((((((((((((((((.(((((((((((....)))...))))...........)))).))-..))))).))))))))).).)))---). ( -37.10) >DroEre_CAF1 41147 91 + 1 CCUCUCUCGCUCCAACCCCUGCAAAGGUGGUCUCAGAUGAGGAAGCCAUUAUAAAAUUUCCUACGU-CGAGGGGUUGAGAAAGAUGCGAA---GC .((.(((((((((.((((((....))).)))....((((((((((...........)))))).)))-)..)))).))))).)).......---.. ( -27.60) >DroYak_CAF1 33543 81 + 1 CCUCUCUCGUUCCCACCCCUACAUAGGUGGCCUCAGCAGAGGAAGCCAUUAUACAUUUUCCUUCGU-CGAGGGGUUGGGAAA------------- .........(((((((((((.....(((..((((....))))..))).............(.....-.)))))).)))))).------------- ( -28.00) >DroAna_CAF1 51761 86 + 1 UGGCUCUC--------UCCCUCGGAGGUGGACUCUGAAGAGGAAGCCAUUAUAAAUUUCCCAUCUG-CGGCCCGCGUGGGGUGCUUCGAGGGGGC (((((..(--------((..((((((.....)))))).)))..))))).........((((.((.(-((.(((....))).)))...)).)))). ( -36.80) >consensus CCUCUCUCGUUCCCACCCCUGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAUUUCCCUUCGU_CGAGGGGUUGGGAAUGAUGCGAG___GC ....((((.................(((..((((....))))..)))...........((((((....))))))..))))............... (-17.22 = -17.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:25 2006