Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,412,148 – 5,412,265 |
Length | 117 |
Max. P | 0.957999 |
Location | 5,412,148 – 5,412,265 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 89.78 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -25.52 |
Energy contribution | -25.15 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.86 |
Structure conservation index | 0.96 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5412148 117 - 22224390 AUAAUAAUCAUGAUAAUAAUAAUCGCACCCACAUAUGGUUGUUUUUUUUUUUUUUACCUCGGGCCAGGGCGUUGGCGCUUGCCAGAGAAAUUCCACAAAAAAAUGUGGAAAAAAACA .....(((((((.....................)))))))((((((...........(((.(((.((.((....)).)).))).)))...(((((((......))))))))))))). ( -26.50) >DroSim_CAF1 19002 109 - 1 AUAAUAAUCAUGAUAAUAAUAAUCGCACCCACACAUGGU-------AUUUUUUUUACCUCGGGCCAGGGCGUUGGCGCUUGCCAGAGAAAUUCCACAAA-AAAUGUGGAAAAAAACA ......((((((.....................))))))-------...........(((.(((.((.((....)).)).))).)))...(((((((..-...)))))))....... ( -25.10) >DroEre_CAF1 28242 106 - 1 AUAAUAAUCAUGAUAAUAAUAAUCGCACCCACACAUGGUAUUU---------UUUACCUCGGGCCAGGGCGUUGGCGCUUGCCGGAGAAAUUCCACAAA-AAAUGUGGAAA-AAGCA ........................(((((.......)))....---------.....(((.(((.((.((....)).)).))).)))...(((((((..-...))))))).-..)). ( -27.60) >DroYak_CAF1 20371 115 - 1 AUAAUAAUCAUGAUAAUAAUAAUCGCACCCACACAUGGUAUUUUUUCUUUUUUUUACCUCGGGCCAGGGCGUUGGCGCUUGCCGGAGAAAUUCCACAAA-AAAUGUGGGAA-AACCA ...................................((((..................(((.(((.((.((....)).)).))).)))...(((((((..-...))))))).-.)))) ( -27.20) >consensus AUAAUAAUCAUGAUAAUAAUAAUCGCACCCACACAUGGUAUUU____UUUUUUUUACCUCGGGCCAGGGCGUUGGCGCUUGCCAGAGAAAUUCCACAAA_AAAUGUGGAAA_AAACA ......((((((.....................))))))..................(((.(((.((.((....)).)).))).)))...(((((((......)))))))....... (-25.52 = -25.15 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:23 2006