Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,411,786 – 5,411,893 |
Length | 107 |
Max. P | 0.825109 |
Location | 5,411,786 – 5,411,893 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -32.38 |
Consensus MFE | -26.48 |
Energy contribution | -26.35 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.12 |
Mean z-score | -1.95 |
Structure conservation index | 0.82 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5411786 107 + 22224390 GGCUUACAUUAAUUAUAAUUUGCAGGCGGUGGGUGAAUCGCAGCUUAUAAUUAUGCAAAAGUCUGCAAUGACACGCCCACCUAUGCAUGCCCGCCCCUC-----GGUAGCUG (((.................((((...((((((((....(((...........)))....(((......))).))))))))..))))((((........-----))))))). ( -31.40) >DroSec_CAF1 19829 107 + 1 GGCUUACAUUAAUUAUAAUUUGCAGGCUGUGGGUGAAUCGCAGCUUAUAAUUAUGCAAAAGUCUGCAAUGACACGCCCACCUAUGCAUCGCCGCCCCUC-----GGUAGCUA ((((................((((....(((((((....(((...........)))....(((......))).)))))))...))))..((((.....)-----))))))). ( -29.10) >DroEre_CAF1 27913 107 + 1 GGCUUACAUUAAUUAUAAUUUGCAGGCUGCGGGUGAAUCGCAGCUUAUAAUUAUGCAAAAGUCUGCAAUGACACGCCCACCUAUGCAUGCCCGCCCCUC-----GGCAGCCA ((((..........((((((...(((((((((.....)))))))))..))))))(((...(((......)))..((........)).)))..(((....-----))))))). ( -31.00) >DroYak_CAF1 20046 112 + 1 AGCUUGCAUUAAUUAUAAUUUGCAAGCUGCGGGUGAAUCGCAGCUUAUAAUUAUGCAAAAGUCUGCAAUGACACGCCCACCUAUGCAAGCCCGCCCCCCAGCUGGGCAGCUA .((((((((....(((((((...(((((((((.....)))))))))..))))))).....(((......)))..........))))))))..((((.......))))..... ( -38.00) >consensus GGCUUACAUUAAUUAUAAUUUGCAGGCUGCGGGUGAAUCGCAGCUUAUAAUUAUGCAAAAGUCUGCAAUGACACGCCCACCUAUGCAUGCCCGCCCCUC_____GGCAGCUA ((((................((((....(((((((....(((...........)))....(((......))).)))))))...)))).....(((.........))))))). (-26.48 = -26.35 + -0.13)
Location | 5,411,786 – 5,411,893 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -35.40 |
Consensus MFE | -26.85 |
Energy contribution | -26.48 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.76 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5411786 107 - 22224390 CAGCUACC-----GAGGGGCGGGCAUGCAUAGGUGGGCGUGUCAUUGCAGACUUUUGCAUAAUUAUAAGCUGCGAUUCACCCACCGCCUGCAAAUUAUAAUUAAUGUAAGCC ..(((.(.-----...)))).(((.((((..((((((.(....(((((((.(((.((......)).)))))))))).).))))))...))))..(((((.....)))))))) ( -32.20) >DroSec_CAF1 19829 107 - 1 UAGCUACC-----GAGGGGCGGCGAUGCAUAGGUGGGCGUGUCAUUGCAGACUUUUGCAUAAUUAUAAGCUGCGAUUCACCCACAGCCUGCAAAUUAUAAUUAAUGUAAGCC ..(((.(.-----...))))(((..((((..(((.((.(((..(((((((.(((.((......)).)))))))))).)))))...)))))))..(((((.....)))))))) ( -29.00) >DroEre_CAF1 27913 107 - 1 UGGCUGCC-----GAGGGGCGGGCAUGCAUAGGUGGGCGUGUCAUUGCAGACUUUUGCAUAAUUAUAAGCUGCGAUUCACCCGCAGCCUGCAAAUUAUAAUUAAUGUAAGCC .((((((.-----((((.((.(((((((........)))))))...))...)))).)).(((((((((((((((.......)))))).......))))))))).....)))) ( -35.41) >DroYak_CAF1 20046 112 - 1 UAGCUGCCCAGCUGGGGGGCGGGCUUGCAUAGGUGGGCGUGUCAUUGCAGACUUUUGCAUAAUUAUAAGCUGCGAUUCACCCGCAGCUUGCAAAUUAUAAUUAAUGCAAGCU ..(((.(((....))).))).(((((((((..((..(((.(((......)))...)))((((((.(((((((((.......)))))))))..)))))).))..))))))))) ( -45.00) >consensus UAGCUACC_____GAGGGGCGGGCAUGCAUAGGUGGGCGUGUCAUUGCAGACUUUUGCAUAAUUAUAAGCUGCGAUUCACCCACAGCCUGCAAAUUAUAAUUAAUGUAAGCC ..(((((...........((((((........(((((.(....(((((((.(((.((......)).)))))))))).).))))).))))))..((((....)))))).))). (-26.85 = -26.48 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:22 2006