Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,404,821 – 5,404,916 |
Length | 95 |
Max. P | 0.980614 |
Location | 5,404,821 – 5,404,916 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.70 |
Mean single sequence MFE | -47.70 |
Consensus MFE | -39.43 |
Energy contribution | -43.27 |
Covariance contribution | 3.84 |
Combinations/Pair | 1.08 |
Mean z-score | -2.01 |
Structure conservation index | 0.83 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5404821 95 + 22224390 GGCCGCUGCCACCGCCGCAUGGGCAUUGAAGUAGGCCAUUCGCGAGGCGGCCGCCAUGGUCAUUUGGUGGUGCUCCCUGUACUGAUGGUGGUGCG------------- ...(((.((((((((((.((((.(((.(.....((((..((....)).)))).).))).)))).))))(((((.....)))))...)))))))))------------- ( -38.40) >DroPse_CAF1 33392 99 + 1 GGCGGCCGCCACCGCUGCAUGGGCGUUGAAGUAGGCCAUGCGGGAGGCGGCUGCCAUGGUCAUUUGAUGGUGAUCCCUGUAGUGGU---------GCUGCUGCUGAUC ((((((((((.((.(.((((((.(.........).))))))))).))))))))))..(((((((....)))))))...(((((...---------...)))))..... ( -48.50) >DroPer_CAF1 37183 108 + 1 GGCGGCCGCCACCGCUGCAUGGGCGUUGAAGUAGGCCAUGCGGGAGGCGGCUGCCAUGGUCAUUUGAUGGUGAUCCCUGUAGUGGUGCUGGUGGUGCUGCUGCUGAUC ((((((((((.((.(.((((((.(.........).))))))))).))))))))))..(((((((....)))))))...((((..(..(.....)..)..))))..... ( -56.20) >consensus GGCGGCCGCCACCGCUGCAUGGGCGUUGAAGUAGGCCAUGCGGGAGGCGGCUGCCAUGGUCAUUUGAUGGUGAUCCCUGUAGUGGUG_UGGUG__GCUGCUGCUGAUC ((((((((((.((..(((((((.(.........).))))))))).))))))))))..(((((((....)))))))...((((((((((.....))))))))))..... (-39.43 = -43.27 + 3.84)
Location | 5,404,821 – 5,404,916 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.70 |
Mean single sequence MFE | -35.23 |
Consensus MFE | -26.27 |
Energy contribution | -27.27 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.75 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5404821 95 - 22224390 -------------CGCACCACCAUCAGUACAGGGAGCACCACCAAAUGACCAUGGCGGCCGCCUCGCGAAUGGCCUACUUCAAUGCCCAUGCGGCGGUGGCAGCGGCC -------------(((..(.((((..((.((.((.......))...)))).)))).)(((((((((((...(((..........)))..))))).)))))).)))... ( -30.70) >DroPse_CAF1 33392 99 - 1 GAUCAGCAGCAGC---------ACCACUACAGGGAUCACCAUCAAAUGACCAUGGCAGCCGCCUCCCGCAUGGCCUACUUCAACGCCCAUGCAGCGGUGGCGGCCGCC ((((.((....))---------.((......))))))................(((.((((((.(((((((((.(.........).)))))).).)).)))))).))) ( -37.50) >DroPer_CAF1 37183 108 - 1 GAUCAGCAGCAGCACCACCAGCACCACUACAGGGAUCACCAUCAAAUGACCAUGGCAGCCGCCUCCCGCAUGGCCUACUUCAACGCCCAUGCAGCGGUGGCGGCCGCC ((((.((....))..........((......))))))................(((.((((((.(((((((((.(.........).)))))).).)).)))))).))) ( -37.50) >consensus GAUCAGCAGCAGC__CACCA_CACCACUACAGGGAUCACCAUCAAAUGACCAUGGCAGCCGCCUCCCGCAUGGCCUACUUCAACGCCCAUGCAGCGGUGGCGGCCGCC ...............................((.....)).............(((.((((((.(((((((((.(.........).)))))).).)).)))))).))) (-26.27 = -27.27 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:20 2006