Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,390,924 – 5,391,044 |
Length | 120 |
Max. P | 0.630715 |
Location | 5,390,924 – 5,391,044 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.05 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -24.09 |
Energy contribution | -24.40 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.54 |
Structure conservation index | 0.82 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5390924 120 + 22224390 CGGCGAAAUGCCGUGAAAAAAAAAACCGAUUUCCAACCCAUCCGUUCGACGAUCCCGAACUUAAAGCAAUUGAGUGAGCGAGGUGAGUGGUUAAAAAAGGGCAAAUUCGCCAAGAAAUCG ((((.....)))).............(((((((.(((((((((((((..((....)).((((((.....))))))))))).))))...)))).......(((......)))..))))))) ( -32.30) >DroSec_CAF1 72025 98 + 1 CG----------------------ACCGAUUUCCAACCCAUCCGUUCGACGAUCCCGAACUUAAAGCAAUUGAGUGAGCGAGGUGAGUGGUUAAAAAAGGGCAAAUUCGCCAAGAAAUCG ..----------------------..(((((((.(((((((((((((..((....)).((((((.....))))))))))).))))...)))).......(((......)))..))))))) ( -27.10) >DroSim_CAF1 59768 98 + 1 CG----------------------ACCGAUUUUCAACCCAUCCGUUCGACGAUCCCGAACUUAAAGCAAUUGAGUGAGCGAGGUGAGUGGUUAAAAAAGGGCAAAUUCGCCAAGAAAUCG ..----------------------..(((((((.(((((((((((((..((....)).((((((.....))))))))))).))))...)))).......(((......)))..))))))) ( -24.90) >DroYak_CAF1 65611 119 + 1 CGGCGAAAAUGCGCGAUAAAA-UUCGCGAUUUCGAAACCAUCCGUUCGACGAUUCCGUACCUAAAGCAAUUGAGUGAGCGAGGUGAGUGGUUAAAAAAGGGCAAAUUCGCCAAGAAAUCG .((((((..(((((((.....-.))))..............((.((..((.((((...((((...((..........)).)))))))).))..))...)))))..))))))......... ( -33.70) >consensus CG______________________ACCGAUUUCCAACCCAUCCGUUCGACGAUCCCGAACUUAAAGCAAUUGAGUGAGCGAGGUGAGUGGUUAAAAAAGGGCAAAUUCGCCAAGAAAUCG ..........................(((((((.(((((((((((((..((....)).((((((.....))))))))))).))))...)))).......(((......)))..))))))) (-24.09 = -24.40 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:15 2006