Locus 1972

Sequence ID X_DroMel_CAF1
Location 5,390,267 – 5,390,372
Length 105
Max. P 0.651439
window3211

overview

Window 1

Location 5,390,267 – 5,390,372
Length 105
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 84.83
Mean single sequence MFE -23.19
Consensus MFE -15.52
Energy contribution -16.02
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.67
SVM decision value 0.25
SVM RNA-class probability 0.651439
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5390267 105 - 22224390
CAAUUAGUAGCAUUACUACUAACACUUCAAUUCUGGCCACUGGAGCCACGCCCCCCACCCCC------------CUUGCCUUCUCU-GGCCACACCACUUUGGGGUUUUCCGUCUCUC
...(((((((.....))))))).(((((((...((((((..((((.((..............------------..)).))))..)-))))).......)))))))............ ( -22.79)
>DroSec_CAF1 71406 104 - 1
CAAUUAGUAGCAUUACUACUAACACUUCAAUUCUGGCCACUGGAGC-GCUCCGACCCCCCGC------------CUCCCCGCCUCU-GGCCACACCACUUUGGGGUUUUCCGUCUCUC
...(((((((.....))))))).(((((((...((((((..((((.-((...........))------------)))).......)-))))).......)))))))............ ( -23.80)
>DroSim_CAF1 59137 104 - 1
CAAUUAGUAGCAUUACUACUAACACUUCAAUUCUGGCCACUGGAGC-GCUCCGACCCCCCGC------------CUCCCCGCCUCU-GGCCACACCACUUUGGGGUUUUCCGUCUCUC
...(((((((.....))))))).(((((((...((((((..((((.-((...........))------------)))).......)-))))).......)))))))............ ( -23.80)
>DroYak_CAF1 64930 117 - 1
CAAUUAGUAGCAUUACUACUAACACUUCAAUUCUGGCCACUGGAGC-UGCCCGACCCUUCGCCCCGCCCCACCCCGCCCCUCCUCUCGUCCUCGCCGCUUUGGGGUUUUCCGUCUCUC
...(((((((.....)))))))............((((.(..((((-.((..(((..........((........))..........)))...)).))))..)))))........... ( -22.35)
>consensus
CAAUUAGUAGCAUUACUACUAACACUUCAAUUCUGGCCACUGGAGC_GCUCCGACCCCCCGC____________CUCCCCGCCUCU_GGCCACACCACUUUGGGGUUUUCCGUCUCUC
...(((((((.....))))))).(((((((...(((((...((((.....................................)))).))))).......)))))))............ (-15.52 = -16.02 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:12 2006