Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 675,257 – 675,348 |
Length | 91 |
Max. P | 0.727775 |
Location | 675,257 – 675,348 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 86.81 |
Mean single sequence MFE | -28.83 |
Consensus MFE | -23.78 |
Energy contribution | -23.23 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.28 |
Mean z-score | -2.03 |
Structure conservation index | 0.82 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 675257 91 - 22224390 UGGAUAUGCCCGAGCUACAGACGGAAAUGAUCUGCAUCCUGAUCAAGCAGACCUCCCGCCACUUGGGCCAGAAGCUCAGUGUGGGCGUCCA .((((..(((((.........(((....(.(((((...........))))).)..))).((((.((((.....))))))))))))))))). ( -28.90) >DroVir_CAF1 2670 91 - 1 UGGACAUGCCGGAGCUACAGACCGAAAUGAUCUGCAUUUUGAUCAAGCAAACCUCCCGACAUAUGGGCCAGAAACUAAGUGUCGGUGUCCA .(((((((((((.........)))...(((((........))))).)))......(((((((.(((........))).)))))))))))). ( -29.60) >DroPse_CAF1 5478 91 - 1 UGGACAUGCCCGAGCUGCAGACGGAGAUGAUCUGCAUAUUGAUCAAGCAGACCUCCCGGCACAUGGGCCAGAAGCUCAGUGUCGGCGUCCA .((((.(((.(((..((((((((....)).))))))..))).....)))......(((((((.(((((.....)))))))))))).)))). ( -34.30) >DroGri_CAF1 3185 91 - 1 UGGACAUGCCGGAACUACAGACCGAAAUGAUUUGCAUUCUAAUUAAGCAAACCUCCCGACAUAUGGGUCAGAAACUAAGUGUCGGUGUCCA .(((((((((((.........)))...(((((........))))).)))......(((((((.(((........))).)))))))))))). ( -24.70) >DroWil_CAF1 2387 91 - 1 UGGAUAUGCCGGAACUGCAAACCGAAAUGAUUUGCAUAUUGAUUAAACAAACUUCCCGACAUAUGGGACAAAAACUAAGUGUCGGCGUCCA .((((..(((((((.((((((.(.....).))))))..(((......)))..)))).(((((.(((........))).)))))))))))). ( -24.40) >DroMoj_CAF1 2919 91 - 1 UGGAUAUGCCGGAGCUGCAGACCGAAAUGAUCUGCAUUCUGAUAAAGCAAACCUCCCGACAUAUGGGCCAGAAACUAAGUGUCGGUGUCCA .(((((((((((((.((((((.(.....).))))))))))).....)))......(((((((.(((........))).)))))))))))). ( -31.10) >consensus UGGACAUGCCGGAGCUACAGACCGAAAUGAUCUGCAUUCUGAUCAAGCAAACCUCCCGACAUAUGGGCCAGAAACUAAGUGUCGGCGUCCA .((((.((((((.........)))...(((((........))))).)))......(((((((.(((........))).))))))).)))). (-23.78 = -23.23 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:45 2006