Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,386,934 – 5,387,028 |
Length | 94 |
Max. P | 0.958276 |
Location | 5,386,934 – 5,387,028 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.78 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -18.12 |
Energy contribution | -17.90 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.69 |
Structure conservation index | 0.56 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5386934 94 + 22224390 ACUCACCCCGGAAAUGUUGG----------UCCUCUCCCAAGGGAAUCCGG-----GCAUUC-------GCCAGAAACUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU ...............(((((----------(((..(((....))).....(-----((....-------))).........))))))))..((((((((......))))))))... ( -30.90) >DroSec_CAF1 68107 92 + 1 ACCCACCCCGGAAAUGUUGG----------UCCUC--CCAAGGGAAUCCGC-----GCAUUC-------GCCAGGAACUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU ..((.....))....(((((----------(((((--(....))).(((((-----(....)-------))..))).....))))))))..((((((((......))))))))... ( -31.40) >DroYak_CAF1 61139 113 + 1 -CACCCCCCGGAAAUGUUGGCCCAACGCGUUCCUC--CCAAGGGAUUCUGUAUUCCGGAUUCCAAAAGGGAAAGGACCUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU -......(((((...((((...))))..((((.((--((...(((.((((.....)))).)))....))))..)))).)))))........((((((((......))))))))... ( -34.50) >consensus ACACACCCCGGAAAUGUUGG__________UCCUC__CCAAGGGAAUCCGC_____GCAUUC_______GCCAGGAACUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU ........((((..(.((((.................)))).)...))))...............................((.....)).((((((((......))))))))... (-18.12 = -17.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:09 2006