Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,384,722 – 5,384,827 |
Length | 105 |
Max. P | 0.591944 |
Location | 5,384,722 – 5,384,827 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -30.52 |
Consensus MFE | -20.06 |
Energy contribution | -20.87 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.66 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5384722 105 - 22224390 CAACAGGCAACAACAAAUCCGAUUUCAUCUGACAGAGCAAACAAUAAU---------------GUUGUUGCUCUGGCUGGCAAAGGAUUUCAUGGGUUUGCUUGAUUGCGAUAAUGAGUU ......((((((((((((((((..((...((.((((((((.((((...---------------)))))))))))).....))...))..))..))))))).))).))))........... ( -29.80) >DroSec_CAF1 65917 103 - 1 CAACAGGCAACAACAAAUCCGAUUUCAUCUGGCAGAGCAAACAAUAAU---------------GUUGUUGCUCUGGCUGGCAAAGGAUUUC-UGGGUUU-CUUGAUUGCGAUAAUGAGUU ......(((((((.((((((((..((..(..(((((((((.((((...---------------))))))))))).))..).....))..))-.))))))-.))).))))........... ( -31.50) >DroSim_CAF1 53263 103 - 1 CAACAGGCAACAACAAAUCCGAUUUCAUCUGGCAGAGCAAACAAUGAU---------------GUUGUUGCUCUGGCUGGCAAAGGAUUUC-UGGGUUU-CUUGAUUGCGAUAAUGAGUU ......(((((((.((((((((..((..(..(((((((((.((((...---------------))))))))))).))..).....))..))-.))))))-.))).))))........... ( -31.50) >DroYak_CAF1 58856 115 - 1 CAACAGGCAA---CAAAUCCGAUUUCAUCUGGCUGGGCAAACAAUAACGUUGUUGUUGCUGCUGUUGUUGCUGUAGCUGGCAAAGGAUUUC-UGCGUUU-CUUGCUUGCGAUAAUGAGUU ..((((.(((---(((....(((...))).(((..(((((.(((((....))))))))))))).)))))))))).((.(((((..(((...-...))).-.))))).))........... ( -29.30) >consensus CAACAGGCAACAACAAAUCCGAUUUCAUCUGGCAGAGCAAACAAUAAU_______________GUUGUUGCUCUGGCUGGCAAAGGAUUUC_UGGGUUU_CUUGAUUGCGAUAAUGAGUU ......((((....((((((((..((..((((((((((((.((((..................))))))))))).))))).....))..))..))))))......))))........... (-20.06 = -20.87 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:06 2006