Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,379,499 – 5,379,611 |
Length | 112 |
Max. P | 0.878538 |
Location | 5,379,499 – 5,379,611 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 91.59 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -26.39 |
Energy contribution | -26.39 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.94 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5379499 112 - 22224390 AUCUGCUACAGCAGCCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUUGCGUUCGCAUCAAUUGAUUAAAAAAUUGCGAUUAGGGCUUUCGCAGUGACAAAUCG-- ..((((......((((((((((...(((((....(((((((....(((((((.....)))))))..))).)))).....))))).))))))))))...))))..........-- ( -31.10) >DroSec_CAF1 60851 105 - 1 AUCUGCU-------CCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUUGCGUUCGCAUCAAUUGAUUAA--AAUUGCGAUUAGGGCUUUCGCAGUGCCUAAUCGAU ..((((.-------((((((((...(((((.((.(((((((....(((((((.....)))))))..))).)))))).--))))).)))))))).....))))............ ( -26.50) >DroSim_CAF1 47811 105 - 1 AUCUGCU-------CCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUAGCGUUCGCAUCAAUUGAUUAA--AAUUGCGAUUAGGGCUUUCGCAGUGCCUAAUCGAU ..((((.-------((((((((...(((((.((.(((((((....(((((((.....)))))))..))).)))))).--))))).)))))))).....))))............ ( -26.50) >consensus AUCUGCU_______CCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUUGCGUUCGCAUCAAUUGAUUAA__AAUUGCGAUUAGGGCUUUCGCAGUGCCUAAUCGAU ..((((........((((((((...(((((....(((((((....(((((((.....)))))))..))).)))).....))))).)))))))).....))))............ (-26.39 = -26.39 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:54 2006