Locus 1961

Sequence ID X_DroMel_CAF1
Location 5,378,144 – 5,378,244
Length 100
Max. P 0.612500
window3189

overview

Window 9

Location 5,378,144 – 5,378,244
Length 100
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -31.72
Consensus MFE -24.70
Energy contribution -24.14
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -1.71
Structure conservation index 0.78
SVM decision value 0.16
SVM RNA-class probability 0.612500
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5378144 100 - 22224390
UUGCCAAAA---AAUCGGCAACGAGCUGCAAAUUUUCCGGGCUGCAACGCAACGCACUGAGUGGCUGCC-UGGGAAAUAUAUGCAUUUAGUUUCGGAAGUCAGA
(((((....---....)))))(((((((((.(((((((((((.((.((.((......)).)).)).)))-))))))))...)))....)).))))......... ( -31.50)
>DroSec_CAF1 59571 100 - 1
UUGCCAAAA---AAUCGGCGACGAGCUGCAAAUUUUCCGGGCUGCAACGCAACUCACUGAGUGGCUGCC-UGGGAAAUAUAUGCAUUUAGUUUCGGAAGUCAGA
(((((....---....)))))(((((((((.(((((((((((.((.((.((......)).)).)).)))-))))))))...)))....)).))))......... ( -31.20)
>DroSim_CAF1 46520 100 - 1
UUGCCAAAA---AAUCGGCGACGGGCUGCAAAUUUUCCGGGCUGCAACGCAACGCACUGAGUGGCUGCC-UGGGAAAUAUAUGCAUUUAGUUUCGGAAGUCAGA
..(((....---....)))(((..(.((((.(((((((((((.((.((.((......)).)).)).)))-))))))))...)))).)..))).(....)..... ( -30.40)
>DroEre_CAF1 52835 103 - 1
UUGCCAAAAAGGAAUCCGCGACGAGCUGCACAUUUUCCGGGCUGCAACGCAACGCACUGAGUGGCUGCC-UGGAAAAUAUAUGCAUUUAGUUUCGGAAGUCAGA
..........((..((((.(((....((((.(((((((((((.((.((.((......)).)).)).)))-))))))))...))))....))).))))..))... ( -35.10)
>DroYak_CAF1 52025 104 - 1
UUGCCAAAAAGAAAUCCGCGACGAGCUGCACAUUUUCCGGGCUGCAACGUAACGCACUGAGUGGCUGCCUUGGAAAAUAUAUGCAUUUAGUUUCGGAAGUCAGA
..........((..((((.(((....((((.(((((((((((.((.((............)).)).))).))))))))...))))....))).))))..))... ( -30.40)
>consensus
UUGCCAAAA___AAUCGGCGACGAGCUGCAAAUUUUCCGGGCUGCAACGCAACGCACUGAGUGGCUGCC_UGGGAAAUAUAUGCAUUUAGUUUCGGAAGUCAGA
..............((.(.(((....((((.(((((((((((.((.((.((......)).)).)).))).))))))))...))))....))).).))....... (-24.70 = -24.14 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:53 2006