Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 663,642 – 663,750 |
Length | 108 |
Max. P | 0.558743 |
Location | 663,642 – 663,750 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 74.70 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -18.58 |
Energy contribution | -18.02 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.50 |
Mean z-score | -1.47 |
Structure conservation index | 0.63 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 663642 108 + 22224390 CGCGGGUAGUCAGUGACAGUUGAUUUAGUUUCGGAACAAAGAGUAUAGAUGUAAUUUGAUACGAAGUUAAAUUAAACGCUCACUGCUUGCGAAAG-----------CCAGAAGAUGCAA ((((((((((.((((....((((((((..((((...((((...(((....))).))))...))))..)))))))).)))).))))))))))...(-----------(........)).. ( -32.50) >DroSec_CAF1 344 99 + 1 CGCGGGUAGUCAGUGCCAG---------UUCCGGAACAAAGAGUAUACACGUAAUAUGAUACGAAGUUAAAUUGAACGCUCACUGCUCGCGAAAG-----------CCAGAUGAUGCAA ((((((((((..((.((..---------....)).))...((((.....((((......))))..(((......)))))))))))))))))...(-----------(........)).. ( -26.30) >DroSim_CAF1 354 108 + 1 CGCGGGUAGUCAGUGCCAGUUGAUUUAGUUCCGGAACAAAGAGUAUACACGUAAUAUGAUACGAAGUUAAAUUGAACGCUCACUGCUCGCGAAAG-----------CCAGAUGAUGCAA ((((((((((.((((.((((((((((.(((....)))............((((......))))))))).)))))..)))).))))))))))...(-----------(........)).. ( -28.60) >DroEre_CAF1 424 119 + 1 UGCGGCUAGUCAGUGCUAGUUGAUUUGGUUCCGUGGGGAAAAGUAUUCUCGUAGUUUGAUAUGAACUUUAGUGAAACUCUCACUAUCCGCAAAAAGCCGAUGAUGCCCGGAUGAUGCAA ((((((((((....)))))))...((((((...((.((((((((....(((((......))))))))))(((((.....))))).))).))...))))))...............))). ( -29.70) >DroYak_CAF1 447 118 + 1 UGCGGGUAGUCAGUGCUAGUUGAUUUGGUUCCGUAGCAAAAAGUAUUCACUUCAUUUGAAACGAACCCAAAUGAAACGUUCACUAUCCGCAAAAAGCCGAC-CUAUCCGGAUGAUGCAA ((((((((((....((...((.((((((...(((..((((((((....))))..))))..)))...)))))).))..))..)))))))))).....(((..-.....)))......... ( -31.00) >consensus CGCGGGUAGUCAGUGCCAGUUGAUUUAGUUCCGGAACAAAGAGUAUACACGUAAUUUGAUACGAAGUUAAAUUAAACGCUCACUGCUCGCGAAAG___________CCAGAUGAUGCAA ((((((((((.((((............(((....)))..............(((((((((.....)))))))))..)))).))))))))))............................ (-18.58 = -18.02 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:44 2006