Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,376,767 – 5,376,886 |
Length | 119 |
Max. P | 0.812026 |
Location | 5,376,767 – 5,376,886 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.46 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -23.68 |
Energy contribution | -23.92 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.55 |
Structure conservation index | 0.83 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5376767 119 + 22224390 CUCUUCCGCAUAAAGUGUUUCGCCAUAUGGACACCGACCUCCUCAGUGGCCAAUGGCUAUCAACUCUAGUCGUUGGGAAAAUGCAAUGCAAAUUGCGAAUUAUUAAAUAAA-AAGCUCAU ...((((..............(((((..(((........)))...)))))(((((((((.......)))))))))))))..((((((....))))))..............-........ ( -27.90) >DroSec_CAF1 58228 119 + 1 CUCUUCCGCAUAAAGUGUUUCGCCAUAUGGACACCGACCUCCUCAGUGGCCAAUGGCUAUCAACUCUAGUCGUUGGGAAAAUGCAAUGCAAAUUGCGAAUUAUUAAAUAAA-AAGCUCAU ...((((..............(((((..(((........)))...)))))(((((((((.......)))))))))))))..((((((....))))))..............-........ ( -27.90) >DroSim_CAF1 45180 119 + 1 CUCUUCCGCAUAAAGUGUUUCGCCAUAUGGACACCGACCUCCUCAGUGGCCAAUGGCUAUCAACUCUAGUCGUUGGGAAAAUGCAAUGCAAAUUGCGAAUUAUUAAAUAAA-AAGCUCAU ...((((..............(((((..(((........)))...)))))(((((((((.......)))))))))))))..((((((....))))))..............-........ ( -27.90) >DroEre_CAF1 51461 118 + 1 CUCUUCCGCAU-AAGCGUUUCGCCAUAUGGACACCGACCUCCUCAGUGGCCAAUGGCUAUCAACUCCGCUCGUUGGGAAAAUGCAAUGCAAAUUGCGAAUUAUUAAAUAAA-GAGCUCAU (((((.(((..-..)))(((((((((.(((.(((.((.....)).))).))))))))..(((((.......))))))))).((((((....))))))............))-)))..... ( -29.70) >DroYak_CAF1 50572 108 + 1 ------------AAGUGUUUCGCCAUAUGGACAGCGACCUGCUCAGUGGCCAAUGGCUAUCAACUCUAGUCGUUGGGCAAAUGCAAUGCAAAUUGCGAAUUACUAAAUAAAAAAGCUCAU ------------.((((.((((((((.((..(((....)))..)))))))(((((((((.......))))))))).......(((((....)))))))).))))................ ( -29.60) >consensus CUCUUCCGCAUAAAGUGUUUCGCCAUAUGGACACCGACCUCCUCAGUGGCCAAUGGCUAUCAACUCUAGUCGUUGGGAAAAUGCAAUGCAAAUUGCGAAUUAUUAAAUAAA_AAGCUCAU .............(((.(((((((((.(((.(((.((.....)).))).))))))))..(((((.......))))))))).((((((....)))))).................)))... (-23.68 = -23.92 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:49 2006