Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,374,882 – 5,375,002 |
Length | 120 |
Max. P | 0.997089 |
Location | 5,374,882 – 5,375,002 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.25 |
Mean single sequence MFE | -59.03 |
Consensus MFE | -51.62 |
Energy contribution | -52.10 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.84 |
Structure conservation index | 0.87 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5374882 120 + 22224390 UGAUCAUGUGGAAGUCCUUGCUGGAGGCGGCCGCGCCGGCACCAGCGGCAUUGGCGGCGUCCAGCAGCGGAUGAUAGCUGGGCGGGGCACAGCCAGUAACCACCGCGCCAGCGCCCAAGU ........(((..((((((((((((.((.((((.((((.......))))..)))).)).)))))))).))))....(((((((((((.((.....))..)).)))).)))))..)))... ( -59.30) >DroSec_CAF1 56342 120 + 1 UGAUCAUGUGGAAGUCCUUGCUGGAGGCAGCCGCGCCGGCACCAGCGGCAUUGGCGGCGUCCAGCAGCGGAUGAUAACUGGGCGGGGCACAGCCACUAACCGCCGCGCCACCGCCCAAGU .......((....((((((((((((.((.((((.((((.......))))..)))).)).)))))))).))))....))((((((((((.(.((........)).).))).)))))))... ( -60.10) >DroSim_CAF1 43296 120 + 1 UGAUCAUGUGGAAGUCCUUGCUGGAAGCGGCCGCGCCGGCACCAGCGGCAUUGGCGGCGUCCAGCAGCGGAUGAUAGCUGGGCGGGGCACAGCCACUAACCGCCGCGCCACCGCCCAAGU .......((....((((((((((((.((.((((.((((.......))))..)))).)).)))))))).))))....))((((((((((.(.((........)).).))).)))))))... ( -60.10) >DroEre_CAF1 49605 120 + 1 UGAUCAUGUGGAAGUCCUUGCUGGAGGCGGCCGCGCCGGCACCAGCGGCAUUGGCGGCGUCCAGCAGCGGAUGAUAGCUGGGCGGGGCACAGCCACUAACGCCCGCCCCGCUGCCCAAGU ........(((..((((((((((((.((.((((.((((.......))))..)))).)).)))))))).))))..((((.(((((((((...))).(....).)))))).)))).)))... ( -60.60) >DroYak_CAF1 48594 120 + 1 UGAUCAUGUGGAAGUCCUUGCUGGAGGCCGCCGCUCCGGCACCAGCGGCAUUGGCGGCGUCCAGCAGCGGAUGAUAGCUGGGCGGAGCACAGCCACUAACCCCCGCGCCGCCGCCCAAGU .......((....((((((((((((.(((((((..(((.......)))...))))))).)))))))).))))....))(((((((.((.(..............).))..)))))))... ( -55.04) >consensus UGAUCAUGUGGAAGUCCUUGCUGGAGGCGGCCGCGCCGGCACCAGCGGCAUUGGCGGCGUCCAGCAGCGGAUGAUAGCUGGGCGGGGCACAGCCACUAACCCCCGCGCCACCGCCCAAGU .......((....((((((((((((.((.((((.((((.......))))..)))).)).)))))))).))))....))((((((((((.(..............).))).)))))))... (-51.62 = -52.10 + 0.48)
Location | 5,374,882 – 5,375,002 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.25 |
Mean single sequence MFE | -59.66 |
Consensus MFE | -55.14 |
Energy contribution | -56.10 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.05 |
Mean z-score | -1.93 |
Structure conservation index | 0.92 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5374882 120 - 22224390 ACUUGGGCGCUGGCGCGGUGGUUACUGGCUGUGCCCCGCCCAGCUAUCAUCCGCUGCUGGACGCCGCCAAUGCCGCUGGUGCCGGCGCGGCCGCCUCCAGCAAGGACUUCCACAUGAUCA ...((((.(((((.((((.(((.((.....)))))))))))))).....(((..(((((((.((.(((..((((((....).))))).))).)).))))))).)))..))))........ ( -56.80) >DroSec_CAF1 56342 120 - 1 ACUUGGGCGGUGGCGCGGCGGUUAGUGGCUGUGCCCCGCCCAGUUAUCAUCCGCUGCUGGACGCCGCCAAUGCCGCUGGUGCCGGCGCGGCUGCCUCCAGCAAGGACUUCCACAUGAUCA ..((((((((.((((((((........))))))))))))))))......(((..(((((((.((.(((..((((((....).))))).))).)).))))))).))).............. ( -63.60) >DroSim_CAF1 43296 120 - 1 ACUUGGGCGGUGGCGCGGCGGUUAGUGGCUGUGCCCCGCCCAGCUAUCAUCCGCUGCUGGACGCCGCCAAUGCCGCUGGUGCCGGCGCGGCCGCUUCCAGCAAGGACUUCCACAUGAUCA ..((((((((.((((((((........))))))))))))))))......(((..(((((((.((.(((..((((((....).))))).))).)).))))))).))).............. ( -63.50) >DroEre_CAF1 49605 120 - 1 ACUUGGGCAGCGGGGCGGGCGUUAGUGGCUGUGCCCCGCCCAGCUAUCAUCCGCUGCUGGACGCCGCCAAUGCCGCUGGUGCCGGCGCGGCCGCCUCCAGCAAGGACUUCCACAUGAUCA ...((((.(((.(((((((.((..........))))))))).)))....(((..(((((((.((.(((..((((((....).))))).))).)).))))))).)))..))))........ ( -55.60) >DroYak_CAF1 48594 120 - 1 ACUUGGGCGGCGGCGCGGGGGUUAGUGGCUGUGCUCCGCCCAGCUAUCAUCCGCUGCUGGACGCCGCCAAUGCCGCUGGUGCCGGAGCGGCGGCCUCCAGCAAGGACUUCCACAUGAUCA ..((((((((.(((((((..........)))))))))))))))......(((..(((((((.((((((....((((....).)))...)))))).))))))).))).............. ( -58.80) >consensus ACUUGGGCGGUGGCGCGGCGGUUAGUGGCUGUGCCCCGCCCAGCUAUCAUCCGCUGCUGGACGCCGCCAAUGCCGCUGGUGCCGGCGCGGCCGCCUCCAGCAAGGACUUCCACAUGAUCA ..((((((((.((((((((........))))))))))))))))......(((..(((((((.((.(((..((((((....).))))).))).)).))))))).))).............. (-55.14 = -56.10 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:48 2006