Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,356,257 – 5,356,356 |
Length | 99 |
Max. P | 0.998386 |
Location | 5,356,257 – 5,356,356 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -16.03 |
Consensus MFE | -14.45 |
Energy contribution | -14.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -0.46 |
Structure conservation index | 0.90 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5356257 99 + 22224390 AUGUUUUUUUUUUUUUUUUGUUUUGCACUUGCCCAUUGUUUUGGUUUGGUCUGCCGGCCAGCACCAGCCACUAAGCCAGCAACGACCAUACCCACCACC ........................((....))..........(((.((((((((.(((..((....))......))).)))..))))).)))....... ( -18.70) >DroSec_CAF1 31531 77 + 1 UUGUUUU---------------UUGCACUUGCCCAUUGUUUUGGUUUGGUCUGCCGGCCAGCAUCACCCACUAAGCCAACAACGACCCUGCU------- .......---------------........((...(((((((((((((((.(((......)))......)))))))))).)))))....)).------- ( -14.70) >DroSim_CAF1 29029 77 + 1 UUGUUUU---------------UUGCACUUGCCCAUUGUUUUGGUUUGGUCUGCCGGCCAGCACCACCCACUAAGCCAACAACGACCCAGCC------- .......---------------........((...(((((((((((((((.....((......))....)))))))))).)))))....)).------- ( -14.70) >consensus UUGUUUU_______________UUGCACUUGCCCAUUGUUUUGGUUUGGUCUGCCGGCCAGCACCACCCACUAAGCCAACAACGACCCUGCC_______ ........................((....))...(((((((((((((((.(((......)))......)))))))))).))))).............. (-14.45 = -14.23 + -0.22)
Location | 5,356,257 – 5,356,356 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -23.01 |
Energy contribution | -22.57 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.27 |
Structure conservation index | 0.91 |
SVM decision value | 3.09 |
SVM RNA-class probability | 0.998386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5356257 99 - 22224390 GGUGGUGGGUAUGGUCGUUGCUGGCUUAGUGGCUGGUGCUGGCCGGCAGACCAAACCAAAACAAUGGGCAAGUGCAAAACAAAAAAAAAAAAAAAACAU .(((((.(((.(((((..((((((((....(((....)))))))))))))))).)))...)).....((....)).....................))) ( -30.20) >DroSec_CAF1 31531 77 - 1 -------AGCAGGGUCGUUGUUGGCUUAGUGGGUGAUGCUGGCCGGCAGACCAAACCAAAACAAUGGGCAAGUGCAA---------------AAAACAA -------.(((.((((..((((((((.((((.....))))))))))))))))...(((......))).....)))..---------------....... ( -23.80) >DroSim_CAF1 29029 77 - 1 -------GGCUGGGUCGUUGUUGGCUUAGUGGGUGGUGCUGGCCGGCAGACCAAACCAAAACAAUGGGCAAGUGCAA---------------AAAACAA -------.((..((((..((((((((.(((.......)))))))))))))))...(((......)))))........---------------....... ( -22.00) >consensus _______GGCAGGGUCGUUGUUGGCUUAGUGGGUGGUGCUGGCCGGCAGACCAAACCAAAACAAUGGGCAAGUGCAA_______________AAAACAA ........((..((((..((((((((.(((.......)))))))))))))))...(((......))))).............................. (-23.01 = -22.57 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:43 2006