Locus 1954

Sequence ID X_DroMel_CAF1
Location 5,355,978 – 5,356,072
Length 94
Max. P 0.856551
window3176

overview

Window 6

Location 5,355,978 – 5,356,072
Length 94
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 81.84
Mean single sequence MFE -28.96
Consensus MFE -21.77
Energy contribution -22.21
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.92
Structure conservation index 0.75
SVM decision value 0.81
SVM RNA-class probability 0.856551
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5355978 94 + 22224390
AUUGGCGAGAUAUCUCAAACCGAACUCAAUCGCAGAUGAACU---GU-------------------AUCUGUAUCUGCGAGAUACCUUUGCCGUUUGAGCUUCCUUGGCCAGACAG
...((((((.((((((.....((......))(((((((....---..-------------------.....)))))))))))))..))))))(((((.(((.....)))))))).. ( -30.70)
>DroSec_CAF1 31251 92 + 1
AUUGACGGCUUACCUCAAAACGAACUCAAUCGCAGAUGAACU------------------------AUCUGUAUCUGCGAGAUACCUUUGCCGUUUGAGCUUCCUUGGCCAGACAG
......(((.....((.....))......(((((((((....------------------------.....))))))))).........)))(((((.(((.....)))))))).. ( -23.80)
>DroSim_CAF1 28752 92 + 1
AUUGACGGCUUAUCUCAAAACGAACUCAAUCGCAGAUGAACU------------------------AUCUGUAUCUGCGAGAUACCUUUGCCGUUUGAGCUUCCUUGGCCAGACAG
......(((.((((((.....((......))(((((((....------------------------.....))))))))))))).....)))(((((.(((.....)))))))).. ( -27.10)
>DroEre_CAF1 33145 97 + 1
AUUGGCGGCCUAUCUCAAGCCGAACGCAAUCGCAGAUAGACGGAUGG-------------------AUCUAUAUCUGCGAGAUACCUUUGCCGUUUGAGCUUCCCUCGCCAGACAG
.(((((((........((((((((((((((((((((((...(((...-------------------.))).))))))))).......))).)))))).))))...))))))).... ( -31.91)
>DroYak_CAF1 33190 116 + 1
AUCUGCGGCUUAUCUCAAACCGAACUCAAUCGCAGAUGGACUAUUGGACUAUCGGACUAUUGGACUAUCUGUAUCUGCGAGAUACCUUUGCCGUUUGAGCUUCCCUUGCCAGACAG
......(((.((((((.....((......))((((((((.(((.(((.(.....).))).))).))))))))......)))))).....)))(((((.((.......))))))).. ( -31.30)
>consensus
AUUGGCGGCUUAUCUCAAACCGAACUCAAUCGCAGAUGAACU___G____________________AUCUGUAUCUGCGAGAUACCUUUGCCGUUUGAGCUUCCUUGGCCAGACAG
......(((.((((((.....((......))(((((((.................................))))))))))))).....)))(((((.((.......))))))).. (-21.77 = -22.21 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:42 2006