Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,348,796 – 5,348,886 |
Length | 90 |
Max. P | 0.735396 |
Location | 5,348,796 – 5,348,886 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -15.56 |
Energy contribution | -17.04 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.19 |
Mean z-score | -1.87 |
Structure conservation index | 0.60 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5348796 90 + 22224390 AUUUCUAU-------GUUGGGAAAACAAGUUUAAUUCACUU----------------------UUGUACCAUUUGAGUGCUGCAAACGGCAACAGUUGCCGCAUUUAAAUGCGACUAGA ...((((.-------((((.....(((((...........)----------------------))))..(((((((((((.((((..(....)..)))).))))))))))))))))))) ( -26.10) >DroSec_CAF1 24204 97 + 1 AUUUCAAUGGAGUUGGUUGGGAAAACAAGUUUAAUUCACUU----------------------UUGUACCAUUUGAGUGCUGAGAACGGAAACAGUUUCCGCAUUUAAAUGCGACUAGA ............(((((((.....(((((...........)----------------------))))..(((((((((((.((((..(....)..)))).)))))))))))))))))). ( -24.90) >DroSim_CAF1 21689 97 + 1 AUUUCAAUGGAGUUGGUUGGGAAAACAAGUUUAAUUCACUU----------------------UUGUACCAUUUGAGUGCUGUGAACGGCAACAGUUUCCGCAUUUAAAUGCGACUAGA ............(((((((.....(((((...........)----------------------))))..(((((((((((.(..((((....).)))..))))))))))))))))))). ( -22.80) >DroEre_CAF1 26545 95 + 1 AUUUGAAUGGAGUUAGUUGGGAAAACAAGUUAAAUUCACUU------------------------GUGCCAUUUGUGUGCUGUGAACGGCAACAGUUUCCGCAUUUAAAUGGGACUAGA .......((((.(((((((......))).)))).))))((.------------------------((.(((((((.((((.(..((((....).)))..))))).))))))).)).)). ( -24.70) >DroYak_CAF1 25889 119 + 1 AUUUCAAUGGCAAUAACUGGGAUAACAAGUUAAAUACACUUGUGUGUGUGUGUGCAGGAUUAUUUGUGCCAUUUGCGUGCUGUGAACGGCAACAGUUAGCAUAUUUAAAUGCGUCUAGA ........(((..((((((.....((((((.......))))))..(((.(((.(((.((....)).)))))).))).(((((....))))).))))))((((......))))))).... ( -31.60) >consensus AUUUCAAUGGAGUUAGUUGGGAAAACAAGUUUAAUUCACUU______________________UUGUACCAUUUGAGUGCUGUGAACGGCAACAGUUUCCGCAUUUAAAUGCGACUAGA .............((((((.......((((.......))))............................(((((((((((.((((..(....)..)))).))))))))))))))))).. (-15.56 = -17.04 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:41 2006