Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 662,853 – 662,965 |
Length | 112 |
Max. P | 0.820558 |
Location | 662,853 – 662,965 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.21 |
Mean single sequence MFE | -36.75 |
Consensus MFE | -26.37 |
Energy contribution | -26.81 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -2.01 |
Structure conservation index | 0.72 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 662853 112 - 22224390 GAUUGG-AGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA-------UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA .....(-((((((((((((((((..(((((...))))).)))))..((((((((((((.....-------...(((....)))))).))))))))).....))))))).)))))...... ( -39.20) >DroSec_CAF1 12848 112 - 1 GAUUGG-GGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA-------UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA ..((((-((..((((((((((((..(((((...))))).)))))..((((((((((((.....-------...(((....)))))).))))))))).....)))))))..)))))).... ( -38.80) >DroSim_CAF1 8784 112 - 1 GAUUGG-GGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA-------UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA ..((((-((..((((((((((((..(((((...))))).)))))..((((((((((((.....-------...(((....)))))).))))))))).....)))))))..)))))).... ( -38.80) >DroEre_CAF1 8297 111 - 1 GAUUGGGGGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGGAAAUACCGAAUAUACCAAAUAGUGGGCAGCAUACCGAAGAGUGCGAAAUC---------C .......((((((((((.(((((..(((((...))))).)))))..((((((.((....)).))))))......(((.....))))))((((........))))))))))---------) ( -30.20) >consensus GAUUGG_GGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA_______UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA ...........((((((((((((..(((((...))))).)))))..((((((((((((...............(((....)))))).))))))))).....)))))))............ (-26.37 = -26.81 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:42 2006