Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,319,049 – 5,319,152 |
Length | 103 |
Max. P | 0.996831 |
Location | 5,319,049 – 5,319,152 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -19.00 |
Energy contribution | -19.19 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.13 |
Mean z-score | -2.50 |
Structure conservation index | 0.69 |
SVM decision value | 2.75 |
SVM RNA-class probability | 0.996831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5319049 103 - 22224390 GCCACACACAAAUUGGCAGCACCUUGCGUGUCUGAGGCACAUA----AAAAGGAUUAGAUGUCUGCCUCGACAUGACAGCC---CCGAAA--------AAAAGAAAAUUG--UCUGCCAA ............(((((((((..(((((((((.((((((.(((----............))).)))))))))))).)))..---.(....--------....).....))--.))))))) ( -27.10) >DroSim_CAF1 46947 106 - 1 GCCACACACAAAUUGGCAGCACCUUGCGUGUCUGGGGCACAUA----AAAAGGAUUAGAUGUCUGCCUCAACAUGACAGCCGCGCCGAAA--------AAAAAAAANNNN--NNNNNNNN ............(((((.((...((((((((.(((((((.(((----............))).)))))))))))).)))..)))))))..--------............--........ ( -24.30) >DroEre_CAF1 58135 116 - 1 GCCACACACAAAUUGGCAGCACCUUGCGUGUCUGGGGCGCAUA----AAAAGGAUUAGAUGUCUGCCUCGACAUGACAGGCGUGCCAAAAAACAAAAAAAACAAAAAAAAUGGCAGCCGA ............(((((.((((((((((((((.(((((((((.----...........))))..))))))))))).)))).))))................((.......))...))))) ( -32.10) >DroYak_CAF1 58475 107 - 1 GCCACACACAAAUUGGCAGCACCUUGCGUGUCUGUGGCACAUAUGUAUAAAGGAUUAGAUGUCUGCCUCAACAUGACAGG-----------ACAAAAAAAAAAAAAAAAA--CCUGCCAA ............(((((((...(((((((((.((.((((.((((.((........)).)))).)))).))))))).))))-----------...................--.))))))) ( -26.10) >consensus GCCACACACAAAUUGGCAGCACCUUGCGUGUCUGGGGCACAUA____AAAAGGAUUAGAUGUCUGCCUCAACAUGACAGCC___CCGAAA________AAAAAAAAAAAA___CUGCCAA ((((.........)))).....(((((((((.((((((((((................))))..))))))))))).))))........................................ (-19.00 = -19.19 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:31 2006