Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,317,285 – 5,317,393 |
Length | 108 |
Max. P | 0.710874 |
Location | 5,317,285 – 5,317,393 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.70 |
Mean single sequence MFE | -30.46 |
Consensus MFE | -12.35 |
Energy contribution | -12.47 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.79 |
Structure conservation index | 0.41 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.710874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5317285 108 - 22224390 AGGCACUCAGCGA-------GUGUCACGUGCUGUGAUAUGCUAACAAACGAAAAGAUA---GAAAAGUAUCUC-GGCAUGAUCGACUU-UAGUGCAGCUGCCUAAAAGUGUGCUAGUCGU .(((((((...))-------))))).(((((((.(((((.(((.(.........).))---)....))))).)-))))))..(((((.-.((..((.((.......))))..))))))). ( -35.60) >DroSec_CAF1 53596 104 - 1 AGGCACUGUGCGA-------GUGUCACGUGCUA-GAUACGCUAACAAACGAA-AGAUA---GAAAAGUAUCUC-GGCAUGAACGACUU-UAGUGCAGCUGCCUAAAAGUGUGCUAGUU-- ((((((((..(..-------..(((.(((((((-(((((.(((.....(...-.).))---)....)))))).-))))))...)))..-..)..))).)))))...............-- ( -33.90) >DroSim_CAF1 45073 104 - 1 AGGCACUGUGCGA-------GUGUCACGUGCUA-GAUACGCUAACAAACGAA-AGAUA---GAAAAGUAUCUC-GGCAUGAACGACUU-UAGUGCAGCUGCCUAAAAGUGUGCUAGUU-- ((((((((..(..-------..(((.(((((((-(((((.(((.....(...-.).))---)....)))))).-))))))...)))..-..)..))).)))))...............-- ( -33.90) >DroEre_CAF1 56589 87 - 1 AGGCAGUGUGCGG-------CUGUCACGUGCUG-GAUUUGCUAACGAAGAACCAA------GGAAAGCAUCUC-GGCAUGAUCGACUACUG----------------GCAUGCAUGAU-- .....((((((((-------..(((.(((((((-(...((((..(..........------)...))))..))-))))))...)))..)).----------------)))))).....-- ( -24.00) >DroYak_CAF1 56820 102 - 1 AGGCAGUGUGCGGUGUGCGAGUGUCACGUGCUAUGCUAUGCUAACGAACAAGAAAGUGGAAGCGAAGUAUCUCAGGCAUGAUCGACUACUA----------------GUACGUAUGAA-- ..((.....))...((((.((((((.(((((((((((.((((..((..........))..)))).)))))....))))))...))).))).----------------)))).......-- ( -24.90) >consensus AGGCACUGUGCGA_______GUGUCACGUGCUA_GAUAUGCUAACAAACGAA_AGAUA___GAAAAGUAUCUC_GGCAUGAUCGACUU_UAGUGCAGCUGCCUAAAAGUGUGCUAGUU__ .(((((..............))))).((((((..(((((...........................)))))...))))))........................................ (-12.35 = -12.47 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:27 2006