Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,314,280 – 5,314,383 |
Length | 103 |
Max. P | 0.999868 |
Location | 5,314,280 – 5,314,383 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.87 |
Mean single sequence MFE | -41.86 |
Consensus MFE | -37.22 |
Energy contribution | -37.42 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.93 |
Structure conservation index | 0.89 |
SVM decision value | 4.31 |
SVM RNA-class probability | 0.999868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5314280 103 + 22224390 UUUGUUCGCAGCU--------------UUCGGCUUUUGGCCAAAAAGGGCGACAAGGGGCCAAGUCAAUCAAAAGUUGGCCCACAGCUCAGCUGGCCAGCG---GCGAAUAAUAGAUGGA .((((((((.(((--------------...(((.....)))......(((......(((((((.(........).))))))).((((...)))))))))).---))))))))........ ( -40.20) >DroSec_CAF1 50761 106 + 1 UUUGUUCGCAGCU--------------UUCGGCUUGUGGCCAAAAAGGGCGACAAGGGGCCAAGUCAAUCAAAAGUUGGCCCACAGCUCAGCUGGCCAGCGGCGGCGAAUAAUAGAUGGA .((((((((.(((--------------...(((((((.(((......))).)))).(((((((.(........).))))))).((((...)))))))...))).))))))))........ ( -44.00) >DroSim_CAF1 42254 106 + 1 UUUGUUCGCAGCU--------------UUCGGCUUUUGGCCAAAAAGGGCGACAAGGGGCCAAGUCAAUCAAAAGUUGGCCCACAGCUCAGCUGGCCAGCGGCGGCGAAUAAUAGAUGGA .((((((((.(((--------------....(((...(((((....((((......(((((((.(........).)))))))...))))...))))))))))).))))))))........ ( -40.80) >DroEre_CAF1 53679 103 + 1 UUUGUUCGCAGCU--------------CUCGCCUUUUGGCCAAAAAGGGCGACAAGGGGCCAAGUCAAUCAAAAGUUGGCCCACAGCUCAGCUGGCCAGCG---GCGAAUAAUAGAUGGC .((((((((.(((--------------.(((((((((......)))))))))....(((((((.(........).))))))).((((...))))...))).---))))))))........ ( -41.50) >DroYak_CAF1 53698 117 + 1 UUUGUUCGCAGCUUUCUGCUUUCGGCUUUCGGCUUUUGGCCAAAAAGGGCGACAAGGGGCCAAGUCAAUCAAAAGUUGGCCCACAGCUCAGCUGGCCAGCG---GCGAAUAAUAGAUGGA .((((((((((((....((.....))....)))).(((((((....((((......(((((((.(........).)))))))...))))...)))))))..---))))))))........ ( -42.80) >consensus UUUGUUCGCAGCU______________UUCGGCUUUUGGCCAAAAAGGGCGACAAGGGGCCAAGUCAAUCAAAAGUUGGCCCACAGCUCAGCUGGCCAGCG___GCGAAUAAUAGAUGGA .((((((((.(((.................(((.....)))......(((......(((((((.(........).))))))).((((...))))))))))....))))))))........ (-37.22 = -37.42 + 0.20)
Location | 5,314,280 – 5,314,383 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.87 |
Mean single sequence MFE | -35.36 |
Consensus MFE | -30.28 |
Energy contribution | -30.32 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.86 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.964024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5314280 103 - 22224390 UCCAUCUAUUAUUCGC---CGCUGGCCAGCUGAGCUGUGGGCCAACUUUUGAUUGACUUGGCCCCUUGUCGCCCUUUUUGGCCAAAAGCCGAA--------------AGCUGCGAACAAA ...........(((((---.((((((((((...)))).(((((((.((......)).)))))))......)))...((((((.....))))))--------------))).))))).... ( -35.50) >DroSec_CAF1 50761 106 - 1 UCCAUCUAUUAUUCGCCGCCGCUGGCCAGCUGAGCUGUGGGCCAACUUUUGAUUGACUUGGCCCCUUGUCGCCCUUUUUGGCCACAAGCCGAA--------------AGCUGCGAACAAA ...........(((((.((...((((((((...)))).(((((((.((......)).))))))).((((.(((......))).))))))))..--------------.)).))))).... ( -35.30) >DroSim_CAF1 42254 106 - 1 UCCAUCUAUUAUUCGCCGCCGCUGGCCAGCUGAGCUGUGGGCCAACUUUUGAUUGACUUGGCCCCUUGUCGCCCUUUUUGGCCAAAAGCCGAA--------------AGCUGCGAACAAA ...........(((((.((....(((((((...)))).(((((((.((......)).)))))))......)))..(((((((.....))))))--------------))).))))).... ( -34.80) >DroEre_CAF1 53679 103 - 1 GCCAUCUAUUAUUCGC---CGCUGGCCAGCUGAGCUGUGGGCCAACUUUUGAUUGACUUGGCCCCUUGUCGCCCUUUUUGGCCAAAAGGCGAG--------------AGCUGCGAACAAA ...........(((((---.((((((((((...)))).(((((((.((......)).)))))))......)))....((.(((....))).))--------------))).))))).... ( -34.10) >DroYak_CAF1 53698 117 - 1 UCCAUCUAUUAUUCGC---CGCUGGCCAGCUGAGCUGUGGGCCAACUUUUGAUUGACUUGGCCCCUUGUCGCCCUUUUUGGCCAAAAGCCGAAAGCCGAAAGCAGAAAGCUGCGAACAAA ...........(((((---.((((((((((...)))).(((((((.((......)).)))))))......)))..(((((((.....)))))))(.(....))....))).))))).... ( -37.10) >consensus UCCAUCUAUUAUUCGC___CGCUGGCCAGCUGAGCUGUGGGCCAACUUUUGAUUGACUUGGCCCCUUGUCGCCCUUUUUGGCCAAAAGCCGAA______________AGCUGCGAACAAA ...........(((((....((((((((((...)))).(((((((.((......)).)))))))......)))...((((((.....))))))..............))).))))).... (-30.28 = -30.32 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:21 2006