Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,313,532 – 5,313,645 |
Length | 113 |
Max. P | 0.734968 |
Location | 5,313,532 – 5,313,645 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.76 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -29.65 |
Energy contribution | -29.65 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.90 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5313532 113 + 22224390 AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGUCAGCCCAAUGGAAAUGAGAUUCGCCCACGGAUAAAACAAAAAAAAAA- ...(((((.((....))))))).(((((......((.((....)).)).((((.(((((((((.((.......)).)))))))))..))))))))).................- ( -32.20) >DroSec_CAF1 50067 106 + 1 AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGGAG-GCCAAUGGAAAUGAGUUUCGCCCACGGACAAAA------AAAAA- ..(.((((.((....))..((((..((((((.(((((..((......))))))))))))).))))(((-((..((....))..))))))))).)........------.....- ( -31.20) >DroSim_CAF1 41568 106 + 1 AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGGCG-GCCAAUGGAAAUGAGUUUCGCCCACGGACAAAA------AAAAA- ..(.((((((.(((..(((((((..((((((.(((((..((......))))))))))))).)))))))-..).((....))..)).)))))).)........------.....- ( -33.70) >DroEre_CAF1 52970 105 + 1 AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGUGG-GCCAAUGGAAAUGAGAUUCGCCCUCGGACA--A------AAGAGC ..(((.....)))...(((((((..(((((..(((((..((......)))))))(((((((((.((..-....)).))))))))))))))..)))))))--.------...... ( -34.50) >consensus AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGGCG_GCCAAUGGAAAUGAGAUUCGCCCACGGACAAAA______AAAAA_ ..(.((((((..(..((.(((((..((((((.(((((..((......))))))))))))).))((.....))...))).))..)..)))))).).................... (-29.65 = -29.65 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:19 2006