Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 662,632 – 662,748 |
Length | 116 |
Max. P | 0.987570 |
Location | 662,632 – 662,748 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -34.05 |
Consensus MFE | -23.91 |
Energy contribution | -24.35 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.22 |
Mean z-score | -2.42 |
Structure conservation index | 0.70 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 662632 116 + 22224390 CAUACAAAAAGCAAACUC----CACAUUACAGCAGAGCGCAAGCUGUCAAAGCUGUAGACCUGGGAAAAUAGCUUUGCGGGAAAGCCCGGAAACUCGAAAGCGCCAUUUUCAGGGGCAUG ..........((......----....((((((((.(((....))).)....))))))).((((..((....(((((.((((....)))(....)..))))))....))..)))).))... ( -36.80) >DroSec_CAF1 12623 115 + 1 CAUACAGAAAGCAAGCCC----CACAUUACACAAGAGCGCAAGCUGUCAAAGGUGUAGACUUGGGAAAAUAGCU-UGCGGGAAAACCCGGAAACUCGAAAACGUUAUUUUCAGGGGCAUG ..............((((----(...((((((.(.(((....))).).....))))))......(((((((((.-...(((....)))(....)........))))))))).)))))... ( -38.00) >DroSim_CAF1 8555 119 + 1 CAUACAAAAAGCAAGCACAUUACACAUUACACAAGAGCGCAAGCUGUGAAAGCUGUAGACUUGGGAAAAUAGCU-UGCGGGAAACCCCGGAAACUCGAAAACGUUAUUUUCAGGGGCAUG ..........((((((...(((((..((.((((...((....)))))).))..))))).(....)......)))-)))......(((((....)..(((((.....))))).)))).... ( -30.00) >DroEre_CAF1 8087 102 + 1 -------------UACCU----CAAUUUACGGCGGAGCGAAAGCUGUCAAAGCUGUAGGCCUAGAAAACUAGCU-GGCGGGAAAGCCCGGAAAUGCGAAAACUCUAUUUUCAGGGGCACG -------------...((----(...(((((((.((((....))..))...)))))))(((.((........))-))))))...(((((((((((.((....)))))))))..))))... ( -31.40) >consensus CAUACAAAAAGCAAACCC____CACAUUACACAAGAGCGCAAGCUGUCAAAGCUGUAGACCUGGGAAAAUAGCU_UGCGGGAAAGCCCGGAAACUCGAAAACGCUAUUUUCAGGGGCAUG ..........................((((((((.(((....))).)....))))))).(((..(((((((((.....(((....)))(....)........)))))))))..))).... (-23.91 = -24.35 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006