Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,311,354 – 5,311,448 |
Length | 94 |
Max. P | 0.967870 |
Location | 5,311,354 – 5,311,448 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.70 |
Mean single sequence MFE | -24.04 |
Consensus MFE | -13.20 |
Energy contribution | -13.32 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.04 |
Structure conservation index | 0.55 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5311354 94 + 22224390 ----------------AAUGCGCAUU-----CGAAUAAAUCGCUCUACAUUGCGAAAGU-----GAACCCUUGUGGCGAAAGUCAAAAUCGGCAAGAGUGAAAAUCGGAGACAAAGACAA ----------------.....(..((-----(((.....(((((((...(..(....).-----.).((....((((....)))).....))..)))))))...)))))..)........ ( -24.60) >DroSec_CAF1 48100 86 + 1 ----------------GUUAGC-----------UACAAAUCGCUCUACAUUGCCAAAGU-----GAACCCUUGUGGCAAAAGUCAA-AUCGGCAAGAGUGAAAAUCGGAGACAAAGACA- ----------------(((...-----------......(((((((...(((((((((.-----.....))).))))))..(((..-...))).))))))).....(....)...))).- ( -22.20) >DroSim_CAF1 39604 86 + 1 ----------------GUUAGC-----------UACAAAUCGCUCUACAUUGCCAAAGU-----GAACCCUUGUGGCAAAAGUCAA-AGCGGCAAGAGUGAAAAUCGGAGACAAAGACA- ----------------(((...-----------......(((((((...(((((((((.-----.....))).))))))..(((..-...))).))))))).....(....)...))).- ( -22.20) >DroEre_CAF1 50813 100 + 1 ----------------UGUCCAUGUUUUCGCCGCAUAAAUCGCUCUACAGUGCUUUAGUUAGCCGAACCC--AUGGCAAAAGUCAA-AUCAGCAAGAGUGAAAAUCGGAGACAAAGACA- ----------------.(((..((((((((.........(((((((...(.(((......))))......--.((((....)))).-.......)))))))....))))))))..))).- ( -23.52) >DroYak_CAF1 50662 111 + 1 CAGUCAUGUUUCCAUGUUUCCAUGUUUCCAGCGAAUAAAACGCUGUUCAGUGCUUUAGU-----GAACCC--AUGGCAAAAGUCAA-AUCAGCGAGAGUGAAAAUCGGAGACAAAGACU- .((((.(((((((...((((((((.....((((.......))))(((((.((...)).)-----)))).)--)))).)))......-.(((.(....)))).....)))))))..))))- ( -27.70) >consensus ________________GUUACA__UU_____CGAAUAAAUCGCUCUACAUUGCCAAAGU_____GAACCCUUGUGGCAAAAGUCAA_AUCGGCAAGAGUGAAAAUCGGAGACAAAGACA_ .......................................(((((((....((((...((.......)).....((((....)))).....))))))))))).....(....)........ (-13.20 = -13.32 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:18 2006