Locus 1936

Sequence ID X_DroMel_CAF1
Location 5,308,690 – 5,308,795
Length 105
Max. P 0.775805
window3145

overview

Window 5

Location 5,308,690 – 5,308,795
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.81
Mean single sequence MFE -24.18
Consensus MFE -18.14
Energy contribution -17.78
Covariance contribution -0.36
Combinations/Pair 1.19
Mean z-score -1.82
Structure conservation index 0.75
SVM decision value 0.54
SVM RNA-class probability 0.775805
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5308690 105 + 22224390
UUGCUAU----UUUA----UAUAUCAUACCAUUUCAAAUCACACCAUUUGU-----AUUUCACGUGUAC--GUACAUGUGAGAUAACCAUGAGAUAAGAGUCCCCAUGCGACUGCGAUUA
((((..(----((((----(...((((.......(((((......)))))(-----(((((((((((..--..))))))))))))...)))).))))))(((.......))).))))... ( -23.10)
>DroSec_CAF1 45435 112 + 1
UUGCCAUAUAUUUUGCUGCCAUAUCAU---AUUUCAAAUCACACCACUUGU-----AUUUCACGUGUACAUGUACAUGUGAGAUAACCAUGAGAUAAGAGUCCCCAUGCGACUGCGAUUA
............((((((.....((.(---((((((....(((.....)))-----((((((((((((....)))))))))))).....))))))).)).....)).))))......... ( -24.50)
>DroSim_CAF1 36951 112 + 1
UUGCCAUAUAUUUUGCUGCCAUAUCAU---AUUUCAAAUCACACCACUUGU-----AUUUCACGUGUACAUGUACAUGUGAGAUAACCAUGCGAUAAGAGUCCCCAUGCGACUGCGAUUA
............((((...........---.......(((.((.......(-----((((((((((((....)))))))))))))....)).)))...((((.......))))))))... ( -22.70)
>DroEre_CAF1 48149 113 + 1
UUGCAAUAUAUUUUGCGGCCAUAUCAU---UUUUAAAAUCGCUUCCCUUGCAACAUGUUUCACGUGUAC--CUACAC--GAGAUAACUAUGAGAUAAGAGCUCCCAUGCGACUGCGAUUA
.(((((......)))))..........---......((((((.((.((((...((((((((.(((((..--..))))--).)).))).)))...)))).((......))))..)))))). ( -23.60)
>DroYak_CAF1 47922 110 + 1
UUGCCAUAUAUUUAUCCCACAUAUCAC---AUUUAAAAUCGCCGCACUUGU-----AUUUCACGUGUAC--GUACAUGUGAGAUAACUAUGCGAUAAGAGUUCCCAUGCGACUGCGAUUA
...........................---......((((((((((....(-----(((((((((((..--..))))))))))))....)))).....((((.......)))))))))). ( -27.00)
>consensus
UUGCCAUAUAUUUUGCUGCCAUAUCAU___AUUUCAAAUCACACCACUUGU_____AUUUCACGUGUAC__GUACAUGUGAGAUAACCAUGAGAUAAGAGUCCCCAUGCGACUGCGAUUA
((((.................((((...............((.......)).....((((((((((((....))))))))))))........))))..((((.......))))))))... (-18.14 = -17.78 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:14 2006