Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,307,527 – 5,307,645 |
Length | 118 |
Max. P | 0.999175 |
Location | 5,307,527 – 5,307,645 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.21 |
Mean single sequence MFE | -41.46 |
Consensus MFE | -35.10 |
Energy contribution | -35.94 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.08 |
Mean z-score | -3.01 |
Structure conservation index | 0.85 |
SVM decision value | 3.41 |
SVM RNA-class probability | 0.999175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5307527 118 + 22224390 GUGGUAACGAUGCCAACA--AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUUUGUCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA .((((((((.(((((...--....(((((.(((((((((((((.(((((.(((.....))).))))).)).....))))))....))))).)))))......)))))..))))))))... ( -42.92) >DroSec_CAF1 44307 116 + 1 GUGGUAACGAUGCCAACA--AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUU--UCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA .((((((((.(((((...--....(((((.(((((((((((((.(((((.(((.....))).)))))....))--))))))....))))).)))))......)))))..))))))))... ( -45.62) >DroSim_CAF1 35837 116 + 1 GUGGUAACGAUGCCAACA--AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUU--UCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA .((((((((.(((((...--....(((((.(((((((((((((.(((((.(((.....))).)))))....))--))))))....))))).)))))......)))))..))))))))... ( -45.62) >DroEre_CAF1 47075 114 + 1 GUGGCAACGAUGCCAGCG--AAAAUGUUGGACAAUGGACGAGACGGCGCCGUGACCUUCGCAGCGCCUUUUUU---C-ACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA .((((((((.(((((.(.--....(((((.......((.((((.(((((.(((.....))).))))))))).)---)-((........)).))))).....))))))..))))))))... ( -39.30) >DroYak_CAF1 46774 117 + 1 GUGGUAACGAUGCCAACAACAAAAUGUUGGACAAUGGACGAGACGGCGCCGUGACCUUUGCAGCGCCUUUUUU---CGACUUUAAAACGUACAGCAAACAAGUGGAAAGUGUUGCCGAGA .(((((((..((((((((......)))))).)).....(((((.(((((.(..(...)..).)))))...)))---))(((((...((.............))..))))))))))))... ( -33.82) >consensus GUGGUAACGAUGCCAACA__AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUU__UCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA .((((((((.(((((.........(((((.(((((((((((((.(((((.(((.....))).))))).))).....)))))....))))).)))))......)))))..))))))))... (-35.10 = -35.94 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:11 2006