Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,306,504 – 5,306,623 |
Length | 119 |
Max. P | 0.990950 |
Location | 5,306,504 – 5,306,623 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.39 |
Mean single sequence MFE | -31.34 |
Consensus MFE | -29.56 |
Energy contribution | -29.76 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.94 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5306504 119 + 22224390 AGGGAGCAAAUUUAUGGCCAUUUGAGUGUUUAAGUAGGGCCAAAAGAA-AGGCGAGCCUUGUAGCAAUUAGCAGGACCCGAAGUAUUUUGUUGACCUUAUUUAAAAUUUAUUUGCUCCUA .((((((((((..((...(((....)))(((((((((((.(((.((((-...((.(.(((((........))))).).)).....)))).))).)))))))))))))..)))))))))). ( -32.60) >DroSec_CAF1 43313 119 + 1 AGGGAGCAAAUUUAUGGCCAUUUGAGUGUUUAAGUAGGGCCAAAAGAA-AGGCGAGCCUUGUAGCAAUUAGCAGGACCCGAAGUAUUUUGUUGACCUUAUUUAAAAUUUAUUUGCUCCUA .((((((((((..((...(((....)))(((((((((((.(((.((((-...((.(.(((((........))))).).)).....)))).))).)))))))))))))..)))))))))). ( -32.60) >DroSim_CAF1 34845 119 + 1 AGGGAGCAAAUUUAUGGCCAUUUGAGUGUUUAAGUAGGGCCAAAAGAA-AGGCGAGCCUUGUAGCAAUUAGCAGGACCCGAAGUAUUUUGUUGACCUUAUUUAAAAUUUAUUUGCUCCUA .((((((((((..((...(((....)))(((((((((((.(((.((((-...((.(.(((((........))))).).)).....)))).))).)))))))))))))..)))))))))). ( -32.60) >DroEre_CAF1 46002 119 + 1 GCGGAGAAAAUUUAUGGCCAUUUGAGUGUUUAAGUAGGACCAAAAGAA-AGGCGAUGCUUGUAGCAAUUAGCAGGAGCCCCAGUAUUUUGUUGACCUUAUUUAAAAUUUAUUUGCUCCUA ..((((............((..(((((.((((((((((..(((.....-.(((..((((.((....)).))))...))).(((....))))))..)))))))))))))))..)))))).. ( -23.30) >DroYak_CAF1 45724 120 + 1 GAGGGGCAAAUUUAUGGCCAUUUGAGUGUUUAAGUAGGGCCAAAAGAAAAGGCGAGGCUUGUGGCAAUUAGCAGGACCCGAAGUAUUUUGUUGACCUUAUUUAAAAUUUAUUUGCUCCUA .((((((((((..((...(((....)))(((((((((((.(((.((((....((.(((((((........))))).)))).....)))).))).)))))))))))))..)))))))))). ( -35.60) >consensus AGGGAGCAAAUUUAUGGCCAUUUGAGUGUUUAAGUAGGGCCAAAAGAA_AGGCGAGCCUUGUAGCAAUUAGCAGGACCCGAAGUAUUUUGUUGACCUUAUUUAAAAUUUAUUUGCUCCUA .((((((((((..((...(((....)))(((((((((((.(((.((((....((.(.(((((........))))).).)).....)))).))).)))))))))))))..)))))))))). (-29.56 = -29.76 + 0.20)
Location | 5,306,504 – 5,306,623 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.39 |
Mean single sequence MFE | -24.91 |
Consensus MFE | -21.88 |
Energy contribution | -22.72 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.99 |
Structure conservation index | 0.88 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5306504 119 - 22224390 UAGGAGCAAAUAAAUUUUAAAUAAGGUCAACAAAAUACUUCGGGUCCUGCUAAUUGCUACAAGGCUCGCCU-UUCUUUUGGCCCUACUUAAACACUCAAAUGGCCAUAAAUUUGCUCCCU ..(((((((((...((......))(((((............(((((..((.....)).....)))))(((.-.......)))..................)))))....))))))))).. ( -27.90) >DroSec_CAF1 43313 119 - 1 UAGGAGCAAAUAAAUUUUAAAUAAGGUCAACAAAAUACUUCGGGUCCUGCUAAUUGCUACAAGGCUCGCCU-UUCUUUUGGCCCUACUUAAACACUCAAAUGGCCAUAAAUUUGCUCCCU ..(((((((((...((......))(((((............(((((..((.....)).....)))))(((.-.......)))..................)))))....))))))))).. ( -27.90) >DroSim_CAF1 34845 119 - 1 UAGGAGCAAAUAAAUUUUAAAUAAGGUCAACAAAAUACUUCGGGUCCUGCUAAUUGCUACAAGGCUCGCCU-UUCUUUUGGCCCUACUUAAACACUCAAAUGGCCAUAAAUUUGCUCCCU ..(((((((((...((......))(((((............(((((..((.....)).....)))))(((.-.......)))..................)))))....))))))))).. ( -27.90) >DroEre_CAF1 46002 119 - 1 UAGGAGCAAAUAAAUUUUAAAUAAGGUCAACAAAAUACUGGGGCUCCUGCUAAUUGCUACAAGCAUCGCCU-UUCUUUUGGUCCUACUUAAACACUCAAAUGGCCAUAAAUUUUCUCCGC ..((((.((((...((......))(((((.(((((....(((((...((((..........))))..))))-)..)))))((.........)).......)))))....)))).)))).. ( -20.10) >DroYak_CAF1 45724 120 - 1 UAGGAGCAAAUAAAUUUUAAAUAAGGUCAACAAAAUACUUCGGGUCCUGCUAAUUGCCACAAGCCUCGCCUUUUCUUUUGGCCCUACUUAAACACUCAAAUGGCCAUAAAUUUGCCCCUC .(((.((((((...........(((((..........(....).....((.....))..........)))))......(((((..................)))))...)))))).))). ( -20.77) >consensus UAGGAGCAAAUAAAUUUUAAAUAAGGUCAACAAAAUACUUCGGGUCCUGCUAAUUGCUACAAGGCUCGCCU_UUCUUUUGGCCCUACUUAAACACUCAAAUGGCCAUAAAUUUGCUCCCU ..(((((((((...((......))(((((............(((((..((.....)).....)))))(((.........)))..................)))))....))))))))).. (-21.88 = -22.72 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:10 2006