Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,305,996 – 5,306,097 |
Length | 101 |
Max. P | 0.671407 |
Location | 5,305,996 – 5,306,097 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.75 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -15.04 |
Energy contribution | -14.60 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.70 |
Structure conservation index | 0.69 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5305996 101 - 22224390 AAAACUUUAAUCUUC-----------AUACACCAUGUGGUGCUAACAAAUCGAAAGGGUUGUUCU-CCGGGCAACCUCAGUUAUUAAACAAUACAUCAUCAAUAAAGGUCACA ....(((((......-----------...((((....)))).((((....(....)(((((((..-...)))))))...))))...................)))))...... ( -19.40) >DroSec_CAF1 42811 107 - 1 AAAACU-----CUUCAAAAAUGACCCACACGCCAUGUGGUGCUUACAAAUCGAAAGGGUUGUGUU-GCUCGCAACCUCAGUUAUUAAACAAUACUUCAUCAAUAAAGGUCACA ......-----.........(((((....((((....))))..........(((.((((((((..-...))))))))..(((....))).....))).........))))).. ( -22.30) >DroSim_CAF1 34342 112 - 1 AAAACUUUAAUCUUCAAAAAUGACCCACACGCCAUGUGGUGCUGACAAAUCGAAAGGGUUGUGUU-GCUCGCAACCUCAGUUAUUAAACAAUACUUCAUCAAUAAAGGUCACA ....................(((((....((((....))))((((.....(....)(((((((..-...)))))))))))..........................))))).. ( -24.40) >DroYak_CAF1 45188 103 - 1 -----U-----CUUCAAAAAUCACCCAUACGCCAUGUGGUGCUUACGAAUCGAAUGGGUUUUUUUGCCAGGCAACCUCAGUUAUCAAACGAUACUUCAUCAAUAUGGGUCACA -----.-----...........(((((((((((....)))).......((((....(((......))).(..(((....)))..)...))))..........))))))).... ( -20.50) >consensus AAAACU_____CUUCAAAAAUGACCCACACGCCAUGUGGUGCUUACAAAUCGAAAGGGUUGUGUU_CCUCGCAACCUCAGUUAUUAAACAAUACUUCAUCAAUAAAGGUCACA ..............................(((...(((((..............((((((((......))))))))..(((....))).......))))).....))).... (-15.04 = -14.60 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:08 2006