Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,305,091 – 5,305,211 |
Length | 120 |
Max. P | 0.782674 |
Location | 5,305,091 – 5,305,211 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.28 |
Mean single sequence MFE | -37.66 |
Consensus MFE | -29.46 |
Energy contribution | -29.50 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.09 |
Mean z-score | -1.77 |
Structure conservation index | 0.78 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5305091 120 - 22224390 GCAUUUGCUGGGCGACUUUCAUUGGGAUAAACUAUUCCUUCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUGCCUGAUUUCUCUAA ....((((((((((....((((.((((........))))..))))...(((......))))).))))))))..(((((((((.....((((((((....)))))).)))))))).))).. ( -32.60) >DroSec_CAF1 41794 119 - 1 GCAUUCGCUGGGCGACUUUGAUGGGGA-AAACUAUUCCUCCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUCCCUGAUUUCGCUAA ((....((((((((......(((((((-(.....)))).)))).....(((......))))).)))))).....((((.(((...(.((((((((....))))))))))))))))))... ( -38.70) >DroSim_CAF1 32591 119 - 1 GCAUUCGCUGGGCGACUUUGAUGGGGA-AAACUAUUUCUCCAUGGCUCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUCCCUGAUUUCGCUAA ((....((((((((......(((((((-((....))))))))).....(((......))))).)))))).....((((.(((...(.((((((((....))))))))))))))))))... ( -40.40) >DroEre_CAF1 43138 116 - 1 GCAUUUGUGGGGCGACUUUCAUGGGGA-GAACUAUU---CCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCGAGAGUGGAAUGUCCGAAGACGUUCCUUGAUUUCGCUAA ..........((((((((((((((((.-...(....---....).))).)))...(((((((...)))))))..)))))))((((..((((((((....))))))))....))))))).. ( -37.90) >DroYak_CAF1 43915 116 - 1 GCACUUGCUGGGCGACUUUCAUGGGGA-AAACUAUG---CCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCGAGAGUGGAAUGUCCGGAGACGUUCCUUGAUUUCGCUAA ((....))..((((((((((((((((.-...(....---....).))).)))...(((((((...)))))))..)))))))((((..((((((((....))))))))....))))))).. ( -38.70) >consensus GCAUUUGCUGGGCGACUUUCAUGGGGA_AAACUAUU_CUCCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUCCCUGAUUUCGCUAA ((....((((((((.........(((.....((((......)))))))(((......))))).)))))).....((((.(((.....((((((((....)))))))).)))))))))... (-29.46 = -29.50 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:07 2006