Locus 193

Sequence ID X_DroMel_CAF1
Location 662,483 – 662,592
Length 109
Max. P 0.512558
window301

overview

Window 1

Location 662,483 – 662,592
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 73.30
Mean single sequence MFE -27.02
Consensus MFE -15.11
Energy contribution -16.55
Covariance contribution 1.44
Combinations/Pair 1.14
Mean z-score -1.66
Structure conservation index 0.56
SVM decision value -0.04
SVM RNA-class probability 0.512558
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 662483 109 + 22224390
---UAAAAAUACCAAAGACCAA-UUGGUCGGAUUGGGACUCAAAACAGCUA------UAGAACAAUGCAUCUGGGCGCCAGGUUCAUGGGUGAAUCGAAGUAUUGUACUUCUAU-UGAAC
---........((((.((((..-..))))...))))...((((..((.(((------(.((((...((........))...)))))))).))....((((((...))))))..)-))).. ( -27.00)
>DroSec_CAF1 12472 111 + 1
---UAAAAAUACCAAAGACCAUCUUGGUCGGGAUGGGACUAAAAACAGCUA------UAGAACAAUGCAUCUGGGCGCCAGGUUCAUGGGUGAAUCGAAGUAUUGUACUUCUAUCUUAAC
---.............((((.....))))((((((((((((..........------))).(((((((.(((((...)))((((((....)))))))).)))))))..)))))))))... ( -26.60)
>DroSim_CAF1 8404 111 + 1
---UAAAAAUACCAAAGACCAUCUUGGUCGGGAUGGGACUAAAAACAGCUA------UAGAACAAUGCAUCUGGGCGCCAGGUUCAUGGGUGAAUCGAAGUAUUGUACUUCUAUCUUAAC
---.............((((.....))))((((((((((((..........------))).(((((((.(((((...)))((((((....)))))))).)))))))..)))))))))... ( -26.60)
>DroEre_CAF1 7950 104 + 1
GUGGUAGCAUAACAA------GAUGGCUCAGUUUGUAACUCGAAAGAGUAAUGCAAAUGGAGUAAUGCA---------AAGUUUCAAGAAUGAAACCAAGU-UUCUACUUCUAUUAGAAC
((((.(((.......------(...((((.(((((((((((....))))..))))))).))))....).---------..((((((....))))))...))-).))))............ ( -27.90)
>consensus
___UAAAAAUACCAAAGACCAUCUUGGUCGGGAUGGGACUAAAAACAGCUA______UAGAACAAUGCAUCUGGGCGCCAGGUUCAUGGGUGAAUCGAAGUAUUGUACUUCUAUCUGAAC
...........((((.((((.....))))...)))).....................(((((((((((...(((...)))((((((....))))))...)))))))...))))....... (-15.11 = -16.55 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:39 2006