Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,303,268 – 5,303,417 |
Length | 149 |
Max. P | 0.986785 |
Location | 5,303,268 – 5,303,377 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.23 |
Mean single sequence MFE | -30.06 |
Consensus MFE | -24.80 |
Energy contribution | -25.08 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.03 |
Mean z-score | -1.81 |
Structure conservation index | 0.83 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5303268 109 + 22224390 AGACACGCGCCCAUUGUUAUUAUAUUGGCAUUAUUGCGAAACAAGCGGGCC--------A---CCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCAC .....((((((...(((....)))..)))....(((.....))))))((((--------(---(.(((..((((((((.((((.....)))).))))))))....)))....)))))).. ( -30.20) >DroSec_CAF1 39986 112 + 1 AGACACGCGCCCAUUGUUAUUAUAUUGGCAUUAUUGCGAAACAAGCGGGCC--------ACCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCAC .....((((((...(((....)))..)))....(((.....))))))((((--------((....(((..((((((((.((((.....)))).))))))))....)))....)))))).. ( -31.20) >DroSim_CAF1 30788 112 + 1 AGACACGCGCCCAUUGUUAUUAUAUUGGCAUUAUUGCGAAACAAGCGGGCC--------ACCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCAC .....((((((...(((....)))..)))....(((.....))))))((((--------((....(((..((((((((.((((.....)))).))))))))....)))....)))))).. ( -31.20) >DroEre_CAF1 41332 107 + 1 AGACACGCGCCCAUUGUUAUUAUAUUGGCAUUAUUGCGAAACAAGCG------------GCCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGU-GCCAC .((((...((((.............((((....(((.....)))...------------)))).......((((((((.((((.....)))).)))))))))))))))).....-..... ( -28.60) >DroYak_CAF1 41912 120 + 1 AAACACGCGCCCAUUGUUAUUAUAUUGGCAUUAUUGCGAAACAAGCGAGCCAGCGAGGGACCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUUGCCAC ....(((.((((..(((.......(((((....((((.......)))))))))...((.....)))))..((((((((.((((.....)))).)))))))))))))))............ ( -29.10) >consensus AGACACGCGCCCAUUGUUAUUAUAUUGGCAUUAUUGCGAAACAAGCGGGCC________ACCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCAC .((((...((((..(((((......)))))...((((.......))))......................((((((((.((((.....)))).))))))))))))))))........... (-24.80 = -25.08 + 0.28)
Location | 5,303,308 – 5,303,417 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -22.38 |
Energy contribution | -23.25 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.04 |
Mean z-score | -3.44 |
Structure conservation index | 0.70 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5303308 109 + 22224390 ACAAGCGGGCCA---CCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCACGCCCCCUUCUCACCACACCCCCCCCCCCCGCCACCAUUGU ....(((((...---.......((((((((.((((.....)))).))))))))((((.(((.....)))...))))......................)))))......... ( -28.10) >DroSec_CAF1 40026 104 + 1 ACAAGCGGGCCACCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCACGCCUCCACC---CGAGGCAGCCCC-----CCCUCUAUUGU ...((.(((.............((((((((.((((.....)))).))))))))((((((((.(.((((........)))).---.).)))))))).-----))).))..... ( -35.00) >DroSim_CAF1 30828 109 + 1 ACAAGCGGGCCACCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCACGCCCCCACC---CGAGGCAGCCCCCCCCCCCCUCUAUUGU ...((.(((.............((((((((.((((.....)))).))))))))((((((((.(.((((........)))).---.).))))))))......))).))..... ( -35.20) >DroEre_CAF1 41372 99 + 1 ACAAGCG----GCCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGU-GCCACGCCCACUCC---CGAGGCAGCCCC-----CCCCCCAUUGU ((((..(----(..........((((((((.((((.....)))).))))))))((((((((.((((-(.......))))..---.).)))))))).-----....)).)))) ( -29.10) >consensus ACAAGCGGGCCACCACCACAUACAAAUUGCUCAAUUCAAAAUUGUGUAAUUUGGGGCUGUCACAGUGGCCACGCCCCCACC___CGAGGCAGCCCC_____CCCUCCAUUGU ....(((((((((....(((..((((((((.((((.....)))).))))))))....)))....)))))).)))...................................... (-22.38 = -23.25 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:03 2006