Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,301,494 – 5,301,669 |
Length | 175 |
Max. P | 0.572819 |
Location | 5,301,494 – 5,301,592 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.13 |
Mean single sequence MFE | -27.35 |
Consensus MFE | -19.33 |
Energy contribution | -19.32 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.71 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5301494 98 + 22224390 ACAUCGCACAGCCAAGUGGAAGUGCGC-UGUUAAAUGAGCGUGUUGCCCGCGGAAAGUCCAACAGCAAAACUAGCAACUUGCAACUUGCAACAUGCCAA (((.(((((..((....))..))))).-)))....((.(((((((((....((.....))....((((..........)))).....))))))))))). ( -31.40) >DroSec_CAF1 38309 87 + 1 ACAUCGCACAGCCAAGUGCAAG--CGC-UGUUAAAUGAGCGUGUUGCCCGCGGAAGGUCCA---------CUUGCAACUUGCUACUUGCAACAUGCCAC .....(((....((((((((((--(((-(........)))))(((((..(.((.....)).---------)..))))))))).))))).....)))... ( -25.40) >DroSim_CAF1 29145 87 + 1 ACAUCGCACAGCCAAGUGGAAG--CGC-UGUUAAAUGAGCGUGUUGCCCGCGGAAGGUCCA---------CUUGCAACUUGCUACUUGCAACAUGCCAC .....(((..((.(((((((.(--(((-(........)))))........(....).))))---------)))))...((((.....))))..)))... ( -24.80) >DroYak_CAF1 40128 82 + 1 ----CGCACAUCCAAGUGGAUG--CGUUUGUUAAAUGAGCGUGUUGC-CGCGGAAGGUCCA---------CUGGCAACUUGCAGCUUGCAACAUGCCA- ----.((.(((((....)))))--.))........((.(((((((((-.((((.....)).---------...((.....)).))..)))))))))))- ( -27.80) >consensus ACAUCGCACAGCCAAGUGGAAG__CGC_UGUUAAAUGAGCGUGUUGCCCGCGGAAGGUCCA_________CUUGCAACUUGCAACUUGCAACAUGCCAC ......(((......))).................((.(((((((((....((.....)).............((.....)).....))))))))))). (-19.33 = -19.32 + -0.00)
Location | 5,301,572 – 5,301,669 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.58 |
Mean single sequence MFE | -34.16 |
Consensus MFE | -23.72 |
Energy contribution | -23.16 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.57 |
Structure conservation index | 0.69 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5301572 97 + 22224390 -------------UGCAACUUGCAACAUGCCAA--------CGCCGUGUGGCACUUUGUUGGGCAAAAGGACCUGAUUGCCAGCAAGGAUAC--CAACGAUGCUGCUUGUAAAAGCCGAA -------------(((((...(((.(.(((((.--------.......)))))(((((((((.(((.((...))..))))))))))))....--....).)))...)))))......... ( -24.80) >DroSec_CAF1 38376 96 + 1 -------------UGCUACUUGCAACAUGCCAC--------CGCCGUGUGGCACUUUGUUG-GCGAAAGGAGCUGAUUGCCAGCAAGGAUAC--CAGCCAUGCUGCUUGUAAAAGCCGAA -------------.(((..((((((..((((((--------......))))))((((((((-((((.((...))..))))))))))))....--((((...)))).)))))).))).... ( -32.30) >DroSim_CAF1 29212 96 + 1 -------------UGCUACUUGCAACAUGCCAC--------CGCCGUGUGGCACUUUGUUG-GCGAAAGGAGCUGAUUGCCAGCAAGGAUAC--CAGCCAUGCUGCUUGUAAAAGCCGAA -------------.(((..((((((..((((((--------......))))))((((((((-((((.((...))..))))))))))))....--((((...)))).)))))).))).... ( -32.30) >DroEre_CAF1 39762 113 + 1 GCCGCCUGCAGCUUGCAGCUUGCAACAUGCCACCGCUACCCCGCCGUGUGGCACUUUGUUG-GCAAGAGGACCUGAUUGCCAGCAAGGAUGCCG------UGCUGCUUGUAAAAGCCGAA ..((.((...((..(((((..(((...(((((((((......).)).))))))((((((((-((((..(....)..)))))))))))).)))..------.)))))..))...)).)).. ( -45.10) >DroYak_CAF1 40191 97 + 1 -------------UGCAGCUUGCAACAUGCCA---------CGCGGUGUUGCACUUUGUUG-GCAAGAGGAGCUGAUUGCCAGCAAGGAUACUGCAAGGAUGCUGCUUGUAAAAGCCGAA -------------(((((..((((((((((..---------.)).))))))))((((((((-((((..(....)..))))))))))))...)))))......(.((((....)))).).. ( -36.30) >consensus _____________UGCAACUUGCAACAUGCCAC________CGCCGUGUGGCACUUUGUUG_GCAAAAGGAGCUGAUUGCCAGCAAGGAUAC__CAACCAUGCUGCUUGUAAAAGCCGAA ..............((...((((((((.((............(((....))).((((((((.((((..(....)..)))))))))))).............)))).))))))..)).... (-23.72 = -23.16 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:00 2006