Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,300,742 – 5,300,842 |
Length | 100 |
Max. P | 0.651576 |
Location | 5,300,742 – 5,300,842 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.47 |
Mean single sequence MFE | -27.03 |
Consensus MFE | -16.36 |
Energy contribution | -17.16 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.61 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5300742 100 - 22224390 CGA---CGACCACGCUGCGUAUGAGUGAUUUUUUUU----UGGGGGGGGGG-------------UUUAUAAAAAAGUGAAAGAAAGUGAAAGAAAGUCGCUGGCAGACGGUCAAAUACAA ...---.((((...((((.....(((((((((((((----(..........-------------(((((......))))).......)))))))))))))).))))..))))........ ( -23.63) >DroSec_CAF1 37551 92 - 1 CGA---CGACCACGCUGCGUAUGAGUGAUAUUUU------UGGGUGGGG-------------------CAAGAAAGUGAACGAAAGUGAAAGAAGGUCGCUAGCAGACGGUCAAAUACAA ...---.((((...((((.....(((((((((((------(..(.....-------------------)..))))))..((....))........)))))).))))..))))........ ( -24.00) >DroSim_CAF1 28376 92 - 1 CGA---CGACCACGCUGCGUAUGAGUGAUAUUUU------UGGGUGGGG-------------------CAAGAAAGUGAACGAAAGUGAAAGAAAGUCGCUAGCAGACGGUCAAAUACAA ...---.((((...((((.....(((((((((((------(..(.....-------------------)..))))))..((....))........)))))).))))..))))........ ( -23.90) >DroEre_CAF1 38979 113 - 1 CCA---CGACCACGCUGCGUAUGAGUGAUAUUUUUU----GGGGCGGGAAACUCGUCUCGUUGCUCCGCAAUAAAGUGAAAGAAAGUGAAAGAAAGUCGCUAGCAGACGGUCAAAUACAA ...---.((((...((((.....((((((.((((((----(((((((....).))))))(((((...)))))................)))))).)))))).))))..))))........ ( -36.10) >DroYak_CAF1 39358 111 - 1 CGACGACGACCACGCUGCGUAUGAGUGAUAUUUUUUUUGGGGGGCGGGUAACGAAAG---------UGAAAGAAAGUCGGAGAAAGUGAAAGAAAGUCGCUAGCAGACGGUCAAAUACAA (..((((.(((.((((.(.((.(((........))).)).).))))))).((....)---------)........))))..)...(((...((..(((.......)))..))...))).. ( -27.50) >consensus CGA___CGACCACGCUGCGUAUGAGUGAUAUUUUUU____UGGGCGGGG___________________CAAGAAAGUGAAAGAAAGUGAAAGAAAGUCGCUAGCAGACGGUCAAAUACAA .......((((...((((.....((((((.((((((....................................................)))))).)))))).))))..))))........ (-16.36 = -17.16 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:58 2006